* [gentoo-commits] gentoo-x86 commit in sci-biology/cutg: ChangeLog cutg-160.ebuild
@ 2008-08-27 14:52 Olivier Fisette (ribosome)
0 siblings, 0 replies; 3+ messages in thread
From: Olivier Fisette (ribosome) @ 2008-08-27 14:52 UTC (permalink / raw
To: gentoo-commits
ribosome 08/08/27 14:52:03
Modified: ChangeLog
Added: cutg-160.ebuild
Log:
New upstream version.
(Portage version: 2.1.4.4)
Revision Changes Path
1.50 sci-biology/cutg/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.50&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.50&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?r1=1.49&r2=1.50
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v
retrieving revision 1.49
retrieving revision 1.50
diff -u -r1.49 -r1.50
--- ChangeLog 10 Dec 2006 18:55:06 -0000 1.49
+++ ChangeLog 27 Aug 2008 14:52:03 -0000 1.50
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/cutg
-# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.49 2006/12/10 18:55:06 ribosome Exp $
+# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.50 2008/08/27 14:52:03 ribosome Exp $
+
+*cutg-160 (27 Aug 2008)
+
+ 27 Aug 2008; Olivier Fisette <ribosome@gentoo.org> +cutg-160.ebuild:
+ New upstream version.
10 Dec 2006; Olivier Fisette <ribosome@gentoo.org> -cutg-150.ebuild:
Pruned old version.
1.1 sci-biology/cutg/cutg-160.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?rev=1.1&content-type=text/plain
Index: cutg-160.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.1 2008/08/27 14:52:03 ribosome Exp $
DESCRIPTION="Codon usage tables calculated from GenBank"
LICENSE="public-domain"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
SRC_URI="mirror://gentoo/${P}.tar.bz2"
SLOT="0"
# Minimal build keeps only the indexed files (if applicable) and the
# documentation. The non-indexed database is not installed.
IUSE="emboss minimal"
KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
DEPEND="emboss? ( sci-biology/emboss )"
src_compile() {
if use emboss; then
mkdir CODONS
echo
einfo "Indexing CUTG for usage with EMBOSS."
EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
"Indexing CUTG failed."
echo
fi
}
src_install() {
if ! use minimal; then
mkdir -p "${D}"usr/share/${PN}
mv *.codon *.spsum "${D}"/usr/share/${PN} || die \
"Installing raw CUTG database failed."
fi
dodoc README CODON_LABEL SPSUM_LABEL || die \
"Failed to install documentation."
if use emboss; then
mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS
cd CODONS
for file in *; do
mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \
"Installing the EMBOSS-indexed database failed."
done
fi
}
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/cutg: ChangeLog cutg-160.ebuild
@ 2009-08-31 21:13 Olivier Fisette (ribosome)
0 siblings, 0 replies; 3+ messages in thread
From: Olivier Fisette (ribosome) @ 2009-08-31 21:13 UTC (permalink / raw
To: gentoo-commits
ribosome 09/08/31 21:13:03
Modified: ChangeLog cutg-160.ebuild
Log:
Stabilised on x86 and amd64.
(Portage version: 2.2_rc40/cvs/Linux x86_64)
Revision Changes Path
1.51 sci-biology/cutg/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.51&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.51&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?r1=1.50&r2=1.51
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v
retrieving revision 1.50
retrieving revision 1.51
diff -u -r1.50 -r1.51
--- ChangeLog 27 Aug 2008 14:52:03 -0000 1.50
+++ ChangeLog 31 Aug 2009 21:13:02 -0000 1.51
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/cutg
-# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.50 2008/08/27 14:52:03 ribosome Exp $
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.51 2009/08/31 21:13:02 ribosome Exp $
+
+ 31 Aug 2009; Olivier Fisette <ribosome@gentoo.org> cutg-160.ebuild:
+ Stabilised on x86 and amd64.
*cutg-160 (27 Aug 2008)
1.2 sci-biology/cutg/cutg-160.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?r1=1.1&r2=1.2
Index: cutg-160.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- cutg-160.ebuild 27 Aug 2008 14:52:03 -0000 1.1
+++ cutg-160.ebuild 31 Aug 2009 21:13:02 -0000 1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2008 Gentoo Foundation
+# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.1 2008/08/27 14:52:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.2 2009/08/31 21:13:02 ribosome Exp $
DESCRIPTION="Codon usage tables calculated from GenBank"
LICENSE="public-domain"
@@ -11,9 +11,10 @@
# Minimal build keeps only the indexed files (if applicable) and the
# documentation. The non-indexed database is not installed.
IUSE="emboss minimal"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+KEYWORDS="amd64 ~ppc ~ppc64 ~sparc x86"
DEPEND="emboss? ( sci-biology/emboss )"
+RDEPEND="${DEPEND}"
src_compile() {
if use emboss; then
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/cutg: ChangeLog cutg-160.ebuild
@ 2010-03-07 20:50 Justin Lecher (jlec)
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher (jlec) @ 2010-03-07 20:50 UTC (permalink / raw
To: gentoo-commits
jlec 10/03/07 20:50:00
Modified: ChangeLog cutg-160.ebuild
Log:
Moved to EAPI=3 for PREFIX support, imported prefix patches from overlay, keyworded as in overlay
(Portage version: 2.2_rc65/cvs/Linux x86_64)
Revision Changes Path
1.53 sci-biology/cutg/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.53&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.53&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?r1=1.52&r2=1.53
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v
retrieving revision 1.52
retrieving revision 1.53
diff -u -r1.52 -r1.53
--- ChangeLog 1 Sep 2009 20:54:10 -0000 1.52
+++ ChangeLog 7 Mar 2010 20:50:00 -0000 1.53
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/cutg
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.52 2009/09/01 20:54:10 ribosome Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.53 2010/03/07 20:50:00 jlec Exp $
+
+ 07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> cutg-160.ebuild:
+ Moved to EAPI=3 for PREFIX support, imported prefix patches from overlay,
+ keyworded as in overlay
01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Giving up maintainership of this package.
1.3 sci-biology/cutg/cutg-160.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?r1=1.2&r2=1.3
Index: cutg-160.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- cutg-160.ebuild 31 Aug 2009 21:13:02 -0000 1.2
+++ cutg-160.ebuild 7 Mar 2010 20:50:00 -0000 1.3
@@ -1,6 +1,8 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.2 2009/08/31 21:13:02 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.3 2010/03/07 20:50:00 jlec Exp $
+
+EAPI="3"
DESCRIPTION="Codon usage tables calculated from GenBank"
LICENSE="public-domain"
@@ -11,7 +13,7 @@
# Minimal build keeps only the indexed files (if applicable) and the
# documentation. The non-indexed database is not installed.
IUSE="emboss minimal"
-KEYWORDS="amd64 ~ppc ~ppc64 ~sparc x86"
+KEYWORDS="amd64 ~ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
DEPEND="emboss? ( sci-biology/emboss )"
RDEPEND="${DEPEND}"
@@ -29,17 +31,17 @@
src_install() {
if ! use minimal; then
- mkdir -p "${D}"usr/share/${PN}
- mv *.codon *.spsum "${D}"/usr/share/${PN} || die \
+ mkdir -p "${ED}"usr/share/${PN}
+ mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \
"Installing raw CUTG database failed."
fi
dodoc README CODON_LABEL SPSUM_LABEL || die \
"Failed to install documentation."
if use emboss; then
- mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS
+ mkdir -p "${ED}"/usr/share/EMBOSS/data/CODONS
cd CODONS
for file in *; do
- mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \
+ mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS || die \
"Installing the EMBOSS-indexed database failed."
done
fi
^ permalink raw reply [flat|nested] 3+ messages in thread
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2009-08-31 21:13 Olivier Fisette (ribosome)
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