* [gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol-plugins-cealign: metadata.xml ChangeLog pymol-plugins-cealign-0.9.ebuild
@ 2010-02-18 22:00 Justin Lecher (jlec)
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From: Justin Lecher (jlec) @ 2010-02-18 22:00 UTC (permalink / raw
To: gentoo-commits
jlec 10/02/18 22:00:45
Added: metadata.xml ChangeLog
pymol-plugins-cealign-0.9.ebuild
Log:
Moved in from sci overlay
(Portage version: 2.2_rc62/cvs/Linux x86_64)
Revision Changes Path
1.1 sci-chemistry/pymol-plugins-cealign/metadata.xml
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/metadata.xml?rev=1.1&content-type=text/plain
Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<maintainer>
<email>jlec@gentoo.org</email>
</maintainer>
</pkgmetadata>
1.1 sci-chemistry/pymol-plugins-cealign/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/ChangeLog?rev=1.1&content-type=text/plain
Index: ChangeLog
===================================================================
# ChangeLog for sci-chemistry/pymol-plugins-cealign
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-cealign/ChangeLog,v 1.1 2010/02/18 22:00:44 jlec Exp $
*pymol-plugins-cealign-0.9 (18 Feb 2010)
18 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org>
+pymol-plugins-cealign-0.9.ebuild, +metadata.xml:
New addition, for further reading:
Shindyalov IN, Bourne PE. Protein structure alignment by incremental
combinatorial extension (CE) of the optimal path. Protein Eng. 1998
Sep;11(9):739-47. PMID: 9796821 [PubMed - indexed for MEDLINE]
1.1 sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild?rev=1.1&content-type=text/plain
Index: pymol-plugins-cealign-0.9.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild,v 1.1 2010/02/18 22:00:44 jlec Exp $
EAPI="3"
SUPPORT_PYTHON_ABIS="1"
inherit distutils
DESCRIPTION="The CE algorithm is a fast and accurate protein structure alignment algorithm."
HOMEPAGE="http://www.pymolwiki.org/index.php/Cealign"
SRC_URI="http://www.pymolwiki.org/images/0/03/Cealign-${PV}.zip"
SLOT="0"
LICENSE="BSD"
KEYWORDS="~x86 ~amd64 ~amd64-linux"
IUSE=""
DEPEND="
dev-python/numpy
~sci-chemistry/pymol-1.2.2"
RDEPEND=""
RESTRICT_PYTHON_ABIS="2.4 3.*"
S=${WORKDIR}/cealign-0.9
src_prepare() {
python_copy_sources
}
src_install(){
mtype=$(uname -m)
distutils_src_install
installation() {
insinto $(python_get_sitedir)/cealign
doins qkabsch.py cealign.py || die
}
python_execute_function -s installation
cat >> "${T}"/pymolrc <<- EOF
run "${EPREFIX}/$(python_get_sitedir -f)/cealign/qkabsch.py"
run "${EPREFIX}/$(python_get_sitedir -f)/cealign/cealign.py"
EOF
insinto ${PYMOL_PATH}
doins "${T}"/pymolrc || die
dodoc CHANGES doc/cealign.pdf || die
}
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2010-02-18 22:00 [gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol-plugins-cealign: metadata.xml ChangeLog pymol-plugins-cealign-0.9.ebuild Justin Lecher (jlec)
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