* [gentoo-commits] gentoo-x86 commit in sci-biology/vienna-rna: ChangeLog vienna-rna-1.8.4.ebuild
@ 2009-11-13 15:43 Andrey Kislyuk (weaver)
0 siblings, 0 replies; 4+ messages in thread
From: Andrey Kislyuk (weaver) @ 2009-11-13 15:43 UTC (permalink / raw
To: gentoo-commits
weaver 09/11/13 15:43:26
Modified: ChangeLog
Added: vienna-rna-1.8.4.ebuild
Log:
Version bump
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Revision Changes Path
1.25 sci-biology/vienna-rna/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.25&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.25&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.24&r2=1.25
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v
retrieving revision 1.24
retrieving revision 1.25
diff -u -r1.24 -r1.25
--- ChangeLog 2 Nov 2009 20:23:39 -0000 1.24
+++ ChangeLog 13 Nov 2009 15:43:25 -0000 1.25
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/vienna-rna
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.24 2009/11/02 20:23:39 maekke Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.25 2009/11/13 15:43:25 weaver Exp $
+
+*vienna-rna-1.8.4 (13 Nov 2009)
+
+ 13 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> +vienna-rna-1.8.4.ebuild:
+ Version bump
02 Nov 2009; Markus Meier <maekke@gentoo.org> vienna-rna-1.8.3.ebuild:
amd64/x86 stable, bug #290926
1.1 sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?rev=1.1&content-type=text/plain
Index: vienna-rna-1.8.4.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v 1.1 2009/11/13 15:43:25 weaver Exp $
EAPI="2"
inherit toolchain-funcs multilib autotools perl-module
DESCRIPTION="The Vienna RNA Package - RNA secondary structure prediction and comparison"
LICENSE="vienna-rna"
HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA"
SRC_URI="http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-${PV}.tar.gz"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86 ~ppc"
DEPEND="dev-lang/perl
media-libs/gd"
RDEPEND="${DEPEND}"
S="${WORKDIR}/ViennaRNA-${PV}"
PATCHES=(
"${FILESDIR}"/${PN}-1.6.5-c-fixes.patch
"${FILESDIR}"/${PN}-1.7.2-LDFLAGS.patch
"${FILESDIR}"/${PN}-1.8.3-gcc4.3.patch
"${FILESDIR}"/${PN}-1.8.3-disable-gd.patch
)
src_prepare() {
base_src_prepare
sed -i 's/ getline/ v_getline/' Readseq/ureadseq.c || die
sed -i '1 i #include <cstdio>' RNAforester/src/rnafuncs.cpp || die
eautoreconf
(cd RNAforester; eautoreconf)
}
src_configure() {
econf --with-cluster || die "Configuration failed."
sed -e "s:LIBDIR = /usr/lib:LIBDIR = ${D}/usr/$(get_libdir):" \
-e "s:INCDIR = /usr/include:INCDIR = ${D}/usr/include:" \
-i RNAforester/g2-0.70/Makefile \
|| die "Failed patching RNAForester build system."
sed -e "s:CC=cc:CC=$(tc-getCC):" -e "s:CFLAGS=:CFLAGS=${CFLAGS}:" \
-i Readseq/Makefile || die "Failed patching readseq Makefile."
}
src_compile() {
emake clean || die
emake || die "Compilation failed."
emake -C Readseq || die "Failed to compile readseq."
# TODO: Add (optional?) support for the NCBI toolkit.
}
src_test() {
cd "${S}"/Perl && emake check || die "Perl tests failed"
cd "${S}"/Readseq && emake test || die "Readseq tests failed"
}
src_install() {
make install DESTDIR="${D}" || die "Installation failed."
dodoc AUTHORS ChangeLog NEWS README THANKS \
|| die "Failed to install documentation."
newbin Readseq/readseq readseq-vienna \
|| die "Installing readseq failed."
dodoc Readseq/Readseq.help || die \
"Readseq Documentation installation failed."
newdoc Readseq/Readme README.readseq && \
newdoc Readseq/Formats Formats.readseq \
|| die "Installing readseq Readme failed."
# remove perlocal.pod to avoid file collisions (see #240358)
fixlocalpod || die "Failed to remove perlocal.pod"
}
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/vienna-rna: ChangeLog vienna-rna-1.8.4.ebuild
@ 2009-12-29 21:00 Christian Faulhammer (fauli)
0 siblings, 0 replies; 4+ messages in thread
From: Christian Faulhammer (fauli) @ 2009-12-29 21:00 UTC (permalink / raw
To: gentoo-commits
fauli 09/12/29 21:00:47
Modified: ChangeLog vienna-rna-1.8.4.ebuild
Log:
stable x86, bug 298769
(Portage version: 2.1.6.13/cvs/Linux i686)
Revision Changes Path
1.26 sci-biology/vienna-rna/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.26&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.26&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.25&r2=1.26
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v
retrieving revision 1.25
retrieving revision 1.26
diff -u -r1.25 -r1.26
--- ChangeLog 13 Nov 2009 15:43:25 -0000 1.25
+++ ChangeLog 29 Dec 2009 21:00:46 -0000 1.26
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/vienna-rna
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.25 2009/11/13 15:43:25 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.26 2009/12/29 21:00:46 fauli Exp $
+
+ 29 Dec 2009; Christian Faulhammer <fauli@gentoo.org>
+ vienna-rna-1.8.4.ebuild:
+ stable x86, bug 298769
*vienna-rna-1.8.4 (13 Nov 2009)
1.2 sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?r1=1.1&r2=1.2
Index: vienna-rna-1.8.4.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- vienna-rna-1.8.4.ebuild 13 Nov 2009 15:43:25 -0000 1.1
+++ vienna-rna-1.8.4.ebuild 29 Dec 2009 21:00:46 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v 1.1 2009/11/13 15:43:25 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v 1.2 2009/12/29 21:00:46 fauli Exp $
EAPI="2"
@@ -13,7 +13,7 @@
SLOT="0"
IUSE=""
-KEYWORDS="~amd64 ~x86 ~ppc"
+KEYWORDS="~amd64 ~ppc x86"
DEPEND="dev-lang/perl
media-libs/gd"
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/vienna-rna: ChangeLog vienna-rna-1.8.4.ebuild
@ 2010-02-09 11:10 Pacho Ramos (pacho)
0 siblings, 0 replies; 4+ messages in thread
From: Pacho Ramos (pacho) @ 2010-02-09 11:10 UTC (permalink / raw
To: gentoo-commits
pacho 10/02/09 11:10:05
Modified: ChangeLog vienna-rna-1.8.4.ebuild
Log:
Really stabling, sorry a lot
(Portage version: 2.1.7.16/cvs/Linux x86_64)
Revision Changes Path
1.29 sci-biology/vienna-rna/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.29&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.29&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.28&r2=1.29
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v
retrieving revision 1.28
retrieving revision 1.29
diff -u -r1.28 -r1.29
--- ChangeLog 9 Feb 2010 11:07:40 -0000 1.28
+++ ChangeLog 9 Feb 2010 11:10:05 -0000 1.29
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/vienna-rna
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.28 2010/02/09 11:07:40 ssuominen Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.29 2010/02/09 11:10:05 pacho Exp $
+
+ 09 Feb 2010; Pacho Ramos <pacho@gentoo.org> vienna-rna-1.8.4.ebuild:
+ amd64 stable, bug 298769
29 Dec 2009; Christian Faulhammer <fauli@gentoo.org>
vienna-rna-1.8.4.ebuild:
1.3 sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?r1=1.2&r2=1.3
Index: vienna-rna-1.8.4.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- vienna-rna-1.8.4.ebuild 29 Dec 2009 21:00:46 -0000 1.2
+++ vienna-rna-1.8.4.ebuild 9 Feb 2010 11:10:05 -0000 1.3
@@ -1,6 +1,6 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v 1.2 2009/12/29 21:00:46 fauli Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v 1.3 2010/02/09 11:10:05 pacho Exp $
EAPI="2"
@@ -13,7 +13,7 @@
SLOT="0"
IUSE=""
-KEYWORDS="~amd64 ~ppc x86"
+KEYWORDS="amd64 ~ppc x86"
DEPEND="dev-lang/perl
media-libs/gd"
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/vienna-rna: ChangeLog vienna-rna-1.8.4.ebuild
@ 2010-04-03 21:41 Justin Lecher (jlec)
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2010-04-03 21:41 UTC (permalink / raw
To: gentoo-commits
jlec 10/04/03 21:41:51
Modified: ChangeLog vienna-rna-1.8.4.ebuild
Log:
jobserver fix, #304117
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.30 sci-biology/vienna-rna/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.30&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.30&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.29&r2=1.30
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v
retrieving revision 1.29
retrieving revision 1.30
diff -u -r1.29 -r1.30
--- ChangeLog 9 Feb 2010 11:10:05 -0000 1.29
+++ ChangeLog 3 Apr 2010 21:41:51 -0000 1.30
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/vienna-rna
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.29 2010/02/09 11:10:05 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.30 2010/04/03 21:41:51 jlec Exp $
+
+ 03 Apr 2010; Justin Lecher <jlec@gentoo.org> vienna-rna-1.8.4.ebuild,
+ +files/vienna-rna-1.8.4-jobserver-fix.patch:
+ jobserver fix, #304117, thanks Myckel
09 Feb 2010; Pacho Ramos <pacho@gentoo.org> vienna-rna-1.8.4.ebuild:
amd64 stable, bug 298769
1.4 sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild?r1=1.3&r2=1.4
Index: vienna-rna-1.8.4.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- vienna-rna-1.8.4.ebuild 9 Feb 2010 11:10:05 -0000 1.3
+++ vienna-rna-1.8.4.ebuild 3 Apr 2010 21:41:51 -0000 1.4
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v 1.3 2010/02/09 11:10:05 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4.ebuild,v 1.4 2010/04/03 21:41:51 jlec Exp $
EAPI="2"
@@ -26,6 +26,7 @@
"${FILESDIR}"/${PN}-1.7.2-LDFLAGS.patch
"${FILESDIR}"/${PN}-1.8.3-gcc4.3.patch
"${FILESDIR}"/${PN}-1.8.3-disable-gd.patch
+ "${FILESDIR}"/${P}-jobserver-fix.patch
)
src_prepare() {
^ permalink raw reply [flat|nested] 4+ messages in thread
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2010-02-09 11:10 [gentoo-commits] gentoo-x86 commit in sci-biology/vienna-rna: ChangeLog vienna-rna-1.8.4.ebuild Pacho Ramos (pacho)
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2010-04-03 21:41 Justin Lecher (jlec)
2009-12-29 21:00 Christian Faulhammer (fauli)
2009-11-13 15:43 Andrey Kislyuk (weaver)
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