* [gentoo-commits] gentoo-x86 commit in sci-chemistry/ccp4i/files: 6.1.3-fix-baubles.patch 6.1.3-rename-truncate.patch 6.1.3-rename-rapper.patch 6.1.3-rename-superpose.patch
@ 2010-02-06 0:24 Justin Lecher (jlec)
0 siblings, 0 replies; only message in thread
From: Justin Lecher (jlec) @ 2010-02-06 0:24 UTC (permalink / raw
To: gentoo-commits
jlec 10/02/06 00:24:32
Added: 6.1.3-fix-baubles.patch 6.1.3-rename-truncate.patch
6.1.3-rename-rapper.patch
6.1.3-rename-superpose.patch
Log:
Splitted interface from ccp4
(Portage version: 2.2_rc62/cvs/Linux x86_64)
Revision Changes Path
1.1 sci-chemistry/ccp4i/files/6.1.3-fix-baubles.patch
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/ccp4i/files/6.1.3-fix-baubles.patch?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/ccp4i/files/6.1.3-fix-baubles.patch?rev=1.1&content-type=text/plain
Index: 6.1.3-fix-baubles.patch
===================================================================
--- ccp4i/etc/configure.def.dist 2009-01-09 16:45:08.000000000 +0100
+++ ccp4i/etc/configure.def.dist.new 2009-07-07 23:17:26.000000000 +0200
@@ -53,8 +53,8 @@
RUN_IMOSFLM _text "ccp4iwish [file join [GetEnvPath CCP4I_TOP] imosflm imosflm.tcl] project [GetCurrentProjectDir [GetCurrentProject]]"
RUN_CCP4MG _text "ccp4mg"
RUN_COOT _text "coot"
-RUN_BAUBLES _text "python [file join [GetEnvPath CCP4] share smartie baubles.py]"
-RUN_DBVIEWER _text "wish [file join [GetEnvPath CCP4] share dbccp4i application viewer.tcl]"
+RUN_BAUBLES _text "python [file join [GetEnvPath CCP4] share ccp4 smartie baubles.py]"
+RUN_DBVIEWER _text "wish [file join [GetEnvPath DBCCP4I_TOP] application viewer.tcl]"
ENABLE_BUBBLE_HELP _logical 1
DISABLE_TASKS _logical 1
CCP4_SETUP_COMMAND _text setup_ccp4
@@ -62,7 +62,7 @@
BLT_LIBRARY _text ""
MENU_LENGTH _positiveint 25
HYPERTEXT_VIEWER _text firefox
-START_NETSCAPE _text netscape
+START_NETSCAPE _text firefox
O_MAPMAN _text mapman
MAPMAN_MAXSIZE _positiveint 4194304
QUANTA_MBKALL _text mbkall
1.1 sci-chemistry/ccp4i/files/6.1.3-rename-truncate.patch
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/ccp4i/files/6.1.3-rename-truncate.patch?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/ccp4i/files/6.1.3-rename-truncate.patch?rev=1.1&content-type=text/plain
Index: 6.1.3-rename-truncate.patch
===================================================================
--- ./ccp4i/templates/truncate.com.orig 2009-03-02 23:31:04.000000000 -0800
+++ ./ccp4i/templates/truncate.com 2009-03-02 23:31:08.000000000 -0800
@@ -11,7 +11,7 @@
$SYMMETRY symmetry $SPACE_GROUP
$CELL cell $CELL_1 $CELL_2 $CELL_3 $CELL_4 $CELL_5 $CELL_6
-1 truncate
+1 ftruncate
- { [StringSame $APPLY_TRUNCATE "WILSON" ] } YES | NO
{[IfSet $ANOMALOUS]} anomalous
- $ANOMALOUS YES | NO
--- ./ccp4i/scripts/truncate.script.orig 2009-03-02 23:39:04.000000000 -0800
+++ ./ccp4i/scripts/truncate.script 2009-03-02 23:39:41.000000000 -0800
@@ -45,7 +45,7 @@
CreateComScript truncate truncate_script
- set cmd "[BinPath truncate] HKLIN \"$HKLIN\""
+ set cmd "[BinPath ftruncate] HKLIN \"$HKLIN\""
if { ![StringSame $INPUT_DATA AMPLITUDES] } {
append cmd " HKLOUT \"$HKL_TRUNCATE\""
}
1.1 sci-chemistry/ccp4i/files/6.1.3-rename-rapper.patch
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/ccp4i/files/6.1.3-rename-rapper.patch?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/ccp4i/files/6.1.3-rename-rapper.patch?rev=1.1&content-type=text/plain
Index: 6.1.3-rename-rapper.patch
===================================================================
--- ccp4i/scripts/rapper.script 2009-02-03 11:49:50.000000000 +0100
+++ ccp4i/scripts/rapper.script.new 2009-03-12 23:34:47.000000000 +0100
@@ -17,7 +17,7 @@
#set up command line
-set cmd "[BinPath rapper]"
+set cmd "[BinPath rappermc]"
set rapperdatadir [FileJoin [GetEnvPath CCP4] share rapper]
set paramsfile [FileJoin [GetEnvPath CCP4] share rapper params.xml]
1.1 sci-chemistry/ccp4i/files/6.1.3-rename-superpose.patch
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/ccp4i/files/6.1.3-rename-superpose.patch?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/ccp4i/files/6.1.3-rename-superpose.patch?rev=1.1&content-type=text/plain
Index: 6.1.3-rename-superpose.patch
===================================================================
diff -arNu ccp4-6.1.1/ccp4i/scripts/superpose.script ccp4-6.1.1.new/ccp4i/scripts/superpose.script
--- ccp4-6.1.1/ccp4i/scripts/superpose.script 2006-07-26 16:22:49.000000000 +0200
+++ ccp4-6.1.1.new/ccp4i/scripts/superpose.script 2009-07-05 22:11:59.000000000 +0200
@@ -21,7 +21,7 @@
if { [regexp SSM $SUPERPOSE_MODE ] } {
- set cmd "[BinPath superpose] \"$XYZIN2\" -s $SSM_MOVING \"$XYZIN1\" -s $SSM_FIXED \"$XYZOUT_LOCAL\""
+ set cmd "[BinPath superpose-ccp4] \"$XYZIN2\" -s $SSM_MOVING \"$XYZIN1\" -s $SSM_FIXED \"$XYZOUT_LOCAL\""
set status [Execute $cmd "" program_status report ]
} elseif { [regexp TOP $SUPERPOSE_MODE ] } {
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2010-02-06 0:24 [gentoo-commits] gentoo-x86 commit in sci-chemistry/ccp4i/files: 6.1.3-fix-baubles.patch 6.1.3-rename-truncate.patch 6.1.3-rename-rapper.patch 6.1.3-rename-superpose.patch Justin Lecher (jlec)
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