[gentoo-commits] gentoo-x86 commit in sci-biology/diya: diya-1.0_rc4.ebuild metadata.xml ChangeLog

[gentoo-commits] gentoo-x86 commit in sci-biology/diya: diya-1.0_rc4.ebuild metadata.xml ChangeLog

[Andrey Kislyuk (weaver)]

weaver      09/09/28 00:16:03

  Added:                diya-1.0_rc4.ebuild metadata.xml ChangeLog
  Log:
  New package, ebuild written by me
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-biology/diya/diya-1.0_rc4.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/diya-1.0_rc4.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/diya-1.0_rc4.ebuild?rev=1.1&content-type=text/plain

Index: diya-1.0_rc4.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/diya/diya-1.0_rc4.ebuild,v 1.1 2009/09/28 00:16:02 weaver Exp $

EAPI="2"

inherit perl-module

DESCRIPTION="Do It Yourself Annotation, a collection of tools and libraries for sequence assembly and annotation"
HOMEPAGE="http://gmod.org/wiki/Diya"
SRC_URI="mirror://sourceforge/diyg/files/diya/diya-1.0/diya-${PV/_/-}.tar.gz"

LICENSE="GPL-3"
SLOT="0"
IUSE="-minimal"
KEYWORDS="~amd64 ~x86"

DEPEND="sci-biology/bioperl
	dev-perl/Data-Utilities
	dev-perl/XML-Simple"
RDEPEND="${DEPEND}
	!minimal? (
		sci-biology/mummer
		sci-biology/glimmer
		sci-biology/trnascan-se
		sci-biology/infernal )"

# see ftp://ftp.ncbi.nih.gov/blast/ to check if blast and blast+ are different from ncbi-tools and ncbi-tools++
# * rfamscan.pl v0.1      (http://www.sanger.ac.uk/Users/sgj/code/)
# * UniRef50                              (http://www.ebi.ac.uk/uniref/)
# * Protein Clusters (ftp://ftp.ncbi.nih.gov/genomes/Bacteria/CLUSTERS/)
# The file cddid_all.tbl can be found at ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/.

S="${WORKDIR}/diya-${PV/_/-}"

SRC_TEST=do

src_install() {
	mydoc="INSTALL README docs/diya.html"
	perl-module_src_install
	insinto /usr/share/${PN}
	doins -r diya.conf docs examples scripts || die
}



1.1                  sci-biology/diya/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<maintainer>
		<email>weaver@gentoo.org</email>
		<name>Andrey Kislyuk</name>
	</maintainer>
	<herd>sci-biology</herd>
</pkgmetadata>



1.1                  sci-biology/diya/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-biology/diya
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/diya/ChangeLog,v 1.1 2009/09/28 00:16:02 weaver Exp $

*diya-1.0_rc4 (27 Sep 2009)

  27 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
  +diya-1.0_rc4.ebuild:
  New package, ebuild written by me