* [gentoo-commits] gentoo-x86 commit in sci-chemistry/pdb2pqr/files: pdb2pqr-1.4.0-automagic.patch
@ 2009-09-24 23:43 Markus Dittrich (markusle)
0 siblings, 0 replies; only message in thread
From: Markus Dittrich (markusle) @ 2009-09-24 23:43 UTC (permalink / raw
To: gentoo-commits
markusle 09/09/24 23:43:11
Modified: pdb2pqr-1.4.0-automagic.patch
Log:
Fixed automagic patch to honor --without-opal (fixes bug #278199).
(Portage version: 2.1.6.13/cvs/Linux x86_64)
Revision Changes Path
1.2 sci-chemistry/pdb2pqr/files/pdb2pqr-1.4.0-automagic.patch
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/files/pdb2pqr-1.4.0-automagic.patch?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/files/pdb2pqr-1.4.0-automagic.patch?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/files/pdb2pqr-1.4.0-automagic.patch?r1=1.1&r2=1.2
Index: pdb2pqr-1.4.0-automagic.patch
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/files/pdb2pqr-1.4.0-automagic.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- pdb2pqr-1.4.0-automagic.patch 24 May 2009 07:50:42 -0000 1.1
+++ pdb2pqr-1.4.0-automagic.patch 24 Sep 2009 23:43:11 -0000 1.2
@@ -1,5 +1,6 @@
---- configure.ac 2009-04-02 16:53:56.000000000 +0200
-+++ configure.ac.new 2009-04-22 11:41:28.000000000 +0200
+diff -Naur pdb2pqr-1.4.0/configure.ac pdb2pqr-1.4.0.new/configure.ac
+--- pdb2pqr-1.4.0/configure.ac 2009-04-02 10:53:56.000000000 -0400
++++ pdb2pqr-1.4.0.new/configure.ac 2009-09-24 19:36:47.000000000 -0400
@@ -255,38 +255,6 @@
# Test for Numeric install
@@ -39,7 +40,14 @@
# If failed, test for numpy
AC_MSG_CHECKING([whether you defined numpy])
-@@ -463,23 +431,8 @@
+@@ -457,29 +425,14 @@
+ HAVE_PDB2PQR_OPAL=1
+ fi
+
+-if test "$PDB2PQR_OPAL_URL" != ""; then
++if test "$PDB2PQR_OPAL_URL" != "no"; then
+ HAVE_PDB2PQR_OPAL=1
+ if test -d $PY_PREFIX/lib/python$PY_VERSION/site-packages/ZSI ; then
echo ZSI is installed
else
# need to install ZSI
@@ -65,8 +73,9 @@
fi
fi
---- pdb2pka/NEWligand_topology.py 2007-10-12 21:52:40.000000000 +0200
-+++ pdb2pka/NEWligand_topology.py.new 2009-04-22 17:01:11.000000000 +0200
+diff -Naur pdb2pqr-1.4.0/pdb2pka/NEWligand_topology.py pdb2pqr-1.4.0.new/pdb2pka/NEWligand_topology.py
+--- pdb2pqr-1.4.0/pdb2pka/NEWligand_topology.py 2007-10-12 15:52:40.000000000 -0400
++++ pdb2pqr-1.4.0.new/pdb2pka/NEWligand_topology.py 2009-09-24 19:36:07.000000000 -0400
@@ -3,10 +3,7 @@
# PC 2005/09/23
# Get ligand topologies
@@ -79,8 +88,9 @@
from sets import Set
from ligandclean.trial_templates import *
---- pdb2pka/ligand_topology.py 2008-06-13 16:15:38.000000000 +0200
-+++ pdb2pka/ligand_topology.py.new 2009-04-22 17:02:59.000000000 +0200
+diff -Naur pdb2pqr-1.4.0/pdb2pka/ligand_topology.py pdb2pqr-1.4.0.new/pdb2pka/ligand_topology.py
+--- pdb2pqr-1.4.0/pdb2pka/ligand_topology.py 2008-06-13 10:15:38.000000000 -0400
++++ pdb2pqr-1.4.0.new/pdb2pka/ligand_topology.py 2009-09-24 19:36:07.000000000 -0400
@@ -3,10 +3,7 @@
# PC 2005/09/23
# Get ligand topologies
^ permalink raw reply [flat|nested] only message in thread
only message in thread, other threads:[~2009-09-24 23:43 UTC | newest]
Thread overview: (only message) (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2009-09-24 23:43 [gentoo-commits] gentoo-x86 commit in sci-chemistry/pdb2pqr/files: pdb2pqr-1.4.0-automagic.patch Markus Dittrich (markusle)
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox