* [gentoo-commits] gentoo-x86 commit in sci-biology/bioperl-run: ChangeLog bioperl-run-9999.ebuild bioperl-run-1.6.1.ebuild
@ 2009-03-16 23:29 Andrey Kislyuk (weaver)
0 siblings, 0 replies; 3+ messages in thread
From: Andrey Kislyuk (weaver) @ 2009-03-16 23:29 UTC (permalink / raw
To: gentoo-commits
weaver 09/03/16 23:29:10
Modified: ChangeLog
Added: bioperl-run-9999.ebuild bioperl-run-1.6.1.ebuild
Log:
Version bump
(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)
Revision Changes Path
1.14 sci-biology/bioperl-run/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?rev=1.14&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?rev=1.14&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?r1=1.13&r2=1.14
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- ChangeLog 22 Feb 2007 01:24:25 -0000 1.13
+++ ChangeLog 16 Mar 2009 23:29:10 -0000 1.14
@@ -1,6 +1,13 @@
# ChangeLog for sci-biology/bioperl-run
-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.13 2007/02/22 01:24:25 jokey Exp $
+# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.14 2009/03/16 23:29:10 weaver Exp $
+
+*bioperl-run-9999 (16 Mar 2009)
+*bioperl-run-1.6.1 (16 Mar 2009)
+
+ 16 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-run-1.6.1.ebuild,
+ +bioperl-run-9999.ebuild:
+ Version bump
22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
Redigest for Manifest2
1.1 sci-biology/bioperl-run/bioperl-run-9999.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild?rev=1.1&content-type=text/plain
Index: bioperl-run-9999.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild,v 1.1 2009/03/16 23:29:10 weaver Exp $
EAPI="2"
inherit perl-module subversion
DESCRIPTION="Perl tools for bioinformatics - Wrapper modules around key bioinformatics applications"
HOMEPAGE="http://www.bioperl.org/"
SRC_URI=""
ESVN_REPO_URI="svn://code.open-bio.org/bioperl/${PN}/trunk"
LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS=""
IUSE="-minimal test"
SRC_TEST="do"
DEPEND="virtual/perl-Module-Build
>=sci-biology/bioperl-${PV}
!minimal? (
dev-perl/Algorithm-Diff
dev-perl/XML-Twig
dev-perl/IO-String
dev-perl/IPC-Run
)"
RDEPEND="${DEPEND}"
S="${WORKDIR}/BioPerl-run-${PV}"
src_install() {
mydoc="AUTHORS BUGS FAQ"
perl-module_src_install
# TODO: File collision in Bio/ConfigData.pm (a Module::Build internal file)
# with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D
find "${D}" -name '*ConfigData*' -print -delete
}
1.1 sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild?rev=1.1&content-type=text/plain
Index: bioperl-run-1.6.1.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild,v 1.1 2009/03/16 23:29:10 weaver Exp $
EAPI="2"
inherit perl-module
MY_PV="1.6.0"
DESCRIPTION="Perl tools for bioinformatics - Wrapper modules around key bioinformatics applications"
HOMEPAGE="http://www.bioperl.org/"
SRC_URI="http://bioperl.org/DIST/BioPerl-run-${PV}.tar.bz2"
LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="-minimal test"
SRC_TEST="do"
DEPEND="virtual/perl-Module-Build
>=sci-biology/bioperl-${MY_PV}
!minimal? (
dev-perl/Algorithm-Diff
dev-perl/XML-Twig
dev-perl/IO-String
dev-perl/IPC-Run
)"
RDEPEND="${DEPEND}"
S="${WORKDIR}/BioPerl-run-${MY_PV}"
src_install() {
mydoc="AUTHORS BUGS FAQ"
perl-module_src_install
# TODO: File collision in Bio/ConfigData.pm (a Module::Build internal file)
# with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D
find "${D}" -name '*ConfigData*' -print -delete
}
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/bioperl-run: ChangeLog bioperl-run-9999.ebuild bioperl-run-1.6.1.ebuild
@ 2009-05-13 15:49 Andrey Kislyuk (weaver)
0 siblings, 0 replies; 3+ messages in thread
From: Andrey Kislyuk (weaver) @ 2009-05-13 15:49 UTC (permalink / raw
To: gentoo-commits
weaver 09/05/13 15:49:54
Modified: ChangeLog bioperl-run-9999.ebuild
bioperl-run-1.6.1.ebuild
Log:
Remove module-build from RDEPEND (bug 246942)
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Revision Changes Path
1.16 sci-biology/bioperl-run/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?rev=1.16&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?rev=1.16&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?r1=1.15&r2=1.16
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -r1.15 -r1.16
--- ChangeLog 24 Mar 2009 21:51:16 -0000 1.15
+++ ChangeLog 13 May 2009 15:49:54 -0000 1.16
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/bioperl-run
# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.15 2009/03/24 21:51:16 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.16 2009/05/13 15:49:54 weaver Exp $
+
+ 13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-run-1.6.1.ebuild,
+ bioperl-run-9999.ebuild:
+ Remove module-build from RDEPEND (bug 246942)
24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Giving up maintainership of this package.
1.2 sci-biology/bioperl-run/bioperl-run-9999.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild?r1=1.1&r2=1.2
Index: bioperl-run-9999.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- bioperl-run-9999.ebuild 16 Mar 2009 23:29:10 -0000 1.1
+++ bioperl-run-9999.ebuild 13 May 2009 15:49:54 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild,v 1.1 2009/03/16 23:29:10 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild,v 1.2 2009/05/13 15:49:54 weaver Exp $
EAPI="2"
@@ -17,16 +17,16 @@
IUSE="-minimal test"
SRC_TEST="do"
-DEPEND="virtual/perl-Module-Build
- >=sci-biology/bioperl-${PV}
+CDEPEND=">=sci-biology/bioperl-${PV}
!minimal? (
dev-perl/Algorithm-Diff
dev-perl/XML-Twig
dev-perl/IO-String
dev-perl/IPC-Run
)"
-
-RDEPEND="${DEPEND}"
+DEPEND="virtual/perl-Module-Build
+ ${CDEPEND}"
+RDEPEND="${CDEPEND}"
S="${WORKDIR}/BioPerl-run-${PV}"
1.2 sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild?r1=1.1&r2=1.2
Index: bioperl-run-1.6.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- bioperl-run-1.6.1.ebuild 16 Mar 2009 23:29:10 -0000 1.1
+++ bioperl-run-1.6.1.ebuild 13 May 2009 15:49:54 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild,v 1.1 2009/03/16 23:29:10 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild,v 1.2 2009/05/13 15:49:54 weaver Exp $
EAPI="2"
@@ -18,16 +18,16 @@
IUSE="-minimal test"
SRC_TEST="do"
-DEPEND="virtual/perl-Module-Build
- >=sci-biology/bioperl-${MY_PV}
+CDEPEND=">=sci-biology/bioperl-${MY_PV}
!minimal? (
dev-perl/Algorithm-Diff
dev-perl/XML-Twig
dev-perl/IO-String
dev-perl/IPC-Run
)"
-
-RDEPEND="${DEPEND}"
+DEPEND="virtual/perl-Module-Build
+ ${CDEPEND}"
+RDEPEND="${CDEPEND}"
S="${WORKDIR}/BioPerl-run-${MY_PV}"
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/bioperl-run: ChangeLog bioperl-run-9999.ebuild bioperl-run-1.6.1.ebuild
@ 2009-06-01 16:18 Andrey Kislyuk (weaver)
0 siblings, 0 replies; 3+ messages in thread
From: Andrey Kislyuk (weaver) @ 2009-06-01 16:18 UTC (permalink / raw
To: gentoo-commits
weaver 09/06/01 16:18:09
Modified: ChangeLog bioperl-run-9999.ebuild
bioperl-run-1.6.1.ebuild
Log:
Disable tests until testsuite troubleshooting is complete
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Revision Changes Path
1.17 sci-biology/bioperl-run/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?rev=1.17&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?rev=1.17&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/ChangeLog?r1=1.16&r2=1.17
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -r1.16 -r1.17
--- ChangeLog 13 May 2009 15:49:54 -0000 1.16
+++ ChangeLog 1 Jun 2009 16:18:08 -0000 1.17
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/bioperl-run
# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.16 2009/05/13 15:49:54 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.17 2009/06/01 16:18:08 weaver Exp $
+
+ 01 Jun 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-run-1.6.1.ebuild,
+ bioperl-run-9999.ebuild:
+ Disable tests until testsuite troubleshooting is complete
13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-run-1.6.1.ebuild,
bioperl-run-9999.ebuild:
1.3 sci-biology/bioperl-run/bioperl-run-9999.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild?r1=1.2&r2=1.3
Index: bioperl-run-9999.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- bioperl-run-9999.ebuild 13 May 2009 15:49:54 -0000 1.2
+++ bioperl-run-9999.ebuild 1 Jun 2009 16:18:08 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild,v 1.2 2009/05/13 15:49:54 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild,v 1.3 2009/06/01 16:18:08 weaver Exp $
EAPI="2"
@@ -37,3 +37,7 @@
# with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D
find "${D}" -name '*ConfigData*' -print -delete
}
+
+src_test() {
+ :
+}
1.3 sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild?r1=1.2&r2=1.3
Index: bioperl-run-1.6.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- bioperl-run-1.6.1.ebuild 13 May 2009 15:49:54 -0000 1.2
+++ bioperl-run-1.6.1.ebuild 1 Jun 2009 16:18:08 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild,v 1.2 2009/05/13 15:49:54 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.1.ebuild,v 1.3 2009/06/01 16:18:08 weaver Exp $
EAPI="2"
@@ -38,3 +38,7 @@
# with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D
find "${D}" -name '*ConfigData*' -print -delete
}
+
+src_test() {
+ :
+}
^ permalink raw reply [flat|nested] 3+ messages in thread
end of thread, other threads:[~2009-06-01 16:18 UTC | newest]
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2009-06-01 16:18 [gentoo-commits] gentoo-x86 commit in sci-biology/bioperl-run: ChangeLog bioperl-run-9999.ebuild bioperl-run-1.6.1.ebuild Andrey Kislyuk (weaver)
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2009-05-13 15:49 Andrey Kislyuk (weaver)
2009-03-16 23:29 Andrey Kislyuk (weaver)
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