[gentoo-commits] gentoo-x86 commit in sci-biology/bioperl-db: metadata.xml ChangeLog bioperl-db-9999.ebuild bioperl-db-1.6.0.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/bioperl-db: metadata.xml ChangeLog bioperl-db-9999.ebuild bioperl-db-1.6.0.ebuild

[Andrey Kislyuk (weaver)]

weaver      09/03/16 23:24:35

  Added:                metadata.xml ChangeLog bioperl-db-9999.ebuild
                        bioperl-db-1.6.0.ebuild
  Log:
  New package, dependency for sci-biology/bioperl
  (Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)

Revision  Changes    Path
1.1                  sci-biology/bioperl-db/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-db/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-db/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<maintainer>
		<email>weaver@gentoo.org</email>
		<name>Andrey Kislyuk</name>
	</maintainer>
	<herd>sci-biology</herd>
</pkgmetadata>



1.1                  sci-biology/bioperl-db/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-db/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-db/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-biology/bioperl-db
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/ChangeLog,v 1.1 2009/03/16 23:24:35 weaver Exp $

*bioperl-db-9999 (16 Mar 2009)
*bioperl-db-1.6.0 (16 Mar 2009)

  16 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
  +bioperl-db-1.6.0.ebuild, +bioperl-db-9999.ebuild:
  New package, dependency for sci-biology/bioperl. Ebuild written by me.




1.1                  sci-biology/bioperl-db/bioperl-db-9999.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-db/bioperl-db-9999.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-db/bioperl-db-9999.ebuild?rev=1.1&content-type=text/plain

Index: bioperl-db-9999.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-9999.ebuild,v 1.1 2009/03/16 23:24:35 weaver Exp $

EAPI="2"

inherit perl-module subversion

DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
HOMEPAGE="http://www.bioperl.org/"
SRC_URI=""
ESVN_REPO_URI="svn://code.open-bio.org/bioperl/${PN}/trunk"

LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS=""
IUSE=""

DEPEND="virtual/perl-Module-Build
	>=sci-biology/bioperl-${PV}
	dev-perl/DBI
	sci-biology/biosql"

RDEPEND="${DEPEND}"

S="${WORKDIR}/BioPerl-db-${PV}"

src_configure() {
	# This disables tests. TODO: Enable tests
	sed -i -e '/biosql_conf();/d' \
		-e '/skip.*DBHarness.biosql.conf/d' "${S}/Build.PL" || die
	perl-module_src_configure
}

src_install() {
	mydoc="AUTHORS BUGS FAQ"
	perl-module_src_install
}



1.1                  sci-biology/bioperl-db/bioperl-db-1.6.0.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-db/bioperl-db-1.6.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl-db/bioperl-db-1.6.0.ebuild?rev=1.1&content-type=text/plain

Index: bioperl-db-1.6.0.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-1.6.0.ebuild,v 1.1 2009/03/16 23:24:35 weaver Exp $

EAPI="2"

inherit perl-module

DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
HOMEPAGE="http://www.bioperl.org/"
SRC_URI="http://bioperl.org/DIST/BioPerl-db-${PV}.tar.bz2"

LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

DEPEND="virtual/perl-Module-Build
	>=sci-biology/bioperl-${PV}
	dev-perl/DBI
	sci-biology/biosql"

RDEPEND="${DEPEND}"

S="${WORKDIR}/BioPerl-db-${PV}"

src_configure() {
	# This disables tests. TODO: Enable tests
	sed -i -e '/biosql_conf();/d' \
		-e '/skip.*DBHarness.biosql.conf/d' "${S}/Build.PL" || die
	perl-module_src_configure
}

src_install() {
	mydoc="AUTHORS BUGS FAQ"
	perl-module_src_install
}