[gentoo-commits] gentoo-x86 commit in sci-biology/amos/files: amos-2.0.7-gcc43.patch

[gentoo-commits] gentoo-x86 commit in sci-biology/amos/files: amos-2.0.7-gcc43.patch

[Andrey Kislyuk (weaver)]

weaver      08/06/17 19:34:50

  Added:                amos-2.0.7-gcc43.patch
  Log:
  Version bump and add gcc-4.3 patch, bug 227597, thanks to Marek Miller
  (Portage version: 2.1.5.5)

Revision  Changes    Path
1.1                  sci-biology/amos/files/amos-2.0.7-gcc43.patch

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/amos/files/amos-2.0.7-gcc43.patch?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/amos/files/amos-2.0.7-gcc43.patch?rev=1.1&content-type=text/plain

Index: amos-2.0.7-gcc43.patch
===================================================================
--- src/Foundation/ConfigFile.cc.orig	2008-06-16 18:12:13.000000000 +0000
+++ src/Foundation/ConfigFile.cc	2008-06-16 18:12:28.000000000 +0000
@@ -35,6 +35,8 @@
 
 #include "ConfigFile.hh"
 
+#include <cstring>
+
 //! Constructor
 /*! Creates a ConfigFile class. Also loads, parses, and resolves
  *  variable substitution.

--- src/Foundation/Logger.cc.orig	2008-06-16 18:13:45.000000000 +0000
+++ src/Foundation/Logger.cc	2008-06-16 18:14:03.000000000 +0000
@@ -58,6 +58,8 @@
  */
 
 #include "Logger.hh"
+#include <cstdlib>
+
 
 //! Sets default values for class
 /*! Note: Log is disabled until a filter level is set\n

--- src/Foundation/OptionResult.cc.orig	2008-06-16 18:15:41.000000000 +0000
+++ src/Foundation/OptionResult.cc	2008-06-16 18:15:51.000000000 +0000
@@ -9,6 +9,8 @@
 //! @brief OptionResult class implementation
 
 #include "OptionResult.hh"
+#include <cstdlib>
+
 
 //! Sets defaults for all results
 OptionResult::OptionResult(const std::string & optionHelp)

--- src/Foundation/Options.cc.orig	2008-06-16 18:17:01.000000000 +0000
+++ src/Foundation/Options.cc	2008-06-16 18:17:11.000000000 +0000
@@ -26,6 +26,8 @@
  */
 
 #include "Options.hh"
+#include <cstring>
+
 
 //! Constructor takes command line options in standard argc, argv format
 /*! Initializes application name, filespec, and invocation

--- src/Align/missing-reads.cc.orig	2008-06-16 18:22:21.000000000 +0000
+++ src/Align/missing-reads.cc	2008-06-16 18:22:34.000000000 +0000
@@ -9,6 +9,8 @@
 #include  <vector>
 #include  <algorithm>
 #include  <cassert>
+#include  <cstring>
+
 using namespace std;
 
 const int  MAX_LINE = 1000;

--- src/Utils/runAmos.cc.orig	2008-06-16 18:30:30.000000000 +0000
+++ src/Utils/runAmos.cc	2008-06-16 18:30:42.000000000 +0000
@@ -18,6 +18,8 @@
 #include <dirent.h>
 #include <fcntl.h>
 #include <iostream>
+#include <cstdlib>
+
 
 #define MAX_STRING 256         // length of various char*s in file
 

--- src/bankViewer/HistogramWindow.cc.orig	2008-06-16 18:36:40.000000000 +0000
+++ src/bankViewer/HistogramWindow.cc	2008-06-16 18:37:04.000000000 +0000
@@ -1,6 +1,8 @@
 #include "HistogramWindow.hh"
 #include "HistogramWidget.hh"
 #include "InsertStats.hh"
+#include <cstdlib>
+
 
 #include <qspinbox.h>
 #include <qcheckbox.h>




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[gentoo-commits] gentoo-x86 commit in sci-biology/amos/files: amos-2.0.7-gcc43.patch

[Andrey Kislyuk (weaver)]

weaver      08/08/26 17:36:21

  Removed:              amos-2.0.7-gcc43.patch
  Log:
  Drop patch