* [gentoo-commits] gentoo-x86 commit in sci-biology/wgs-assembler: ChangeLog wgs-assembler-5.4.ebuild
@ 2009-09-27 20:02 99% Andrey Kislyuk (weaver)
0 siblings, 0 replies; 1+ results
From: Andrey Kislyuk (weaver) @ 2009-09-27 20:02 UTC (permalink / raw
To: gentoo-commits
weaver 09/09/27 20:02:03
Modified: ChangeLog
Added: wgs-assembler-5.4.ebuild
Log:
Version bump
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Revision Changes Path
1.2 sci-biology/wgs-assembler/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/ChangeLog?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/ChangeLog?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/ChangeLog?r1=1.1&r2=1.2
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/ChangeLog,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- ChangeLog 5 Jun 2009 15:16:05 -0000 1.1
+++ ChangeLog 27 Sep 2009 20:02:03 -0000 1.2
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/wgs-assembler
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/ChangeLog,v 1.1 2009/06/05 15:16:05 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/ChangeLog,v 1.2 2009/09/27 20:02:03 weaver Exp $
+
+*wgs-assembler-5.4 (27 Sep 2009)
+
+ 27 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +wgs-assembler-5.4.ebuild:
+ Version bump
*wgs-assembler-5.3 (05 Jun 2009)
1.1 sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild?rev=1.1&content-type=text/plain
Index: wgs-assembler-5.4.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild,v 1.1 2009/09/27 20:02:03 weaver Exp $
EAPI="2"
inherit eutils toolchain-funcs
DESCRIPTION="Whole-genome shotgun assembler based on the Celera Assembler"
HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/"
SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2"
LICENSE="GPL-2"
SLOT="0"
IUSE=""
KEYWORDS="~x86 ~amd64"
DEPEND="x11-libs/libXt"
RDEPEND="${DEPEND}
app-shells/tcsh
dev-perl/Log-Log4perl"
S="${WORKDIR}/wgs-${PV}"
src_configure() {
sed -i -e "s/CC *= *gcc/CC = $(tc-getCC)/" \
-e "s/CXX *= *g++/CXX = $(tc-getCXX)/" \
"${S}"/src/c_make.as || die
sed -i -e "s/CC *:=.*/CC := $(tc-getCC)/" \
-e "s/CXX *:=.*/CXX := $(tc-getCXX)/" \
"${S}"/kmer/configure.sh || die
cd "${S}/kmer"
./configure.sh || die
}
src_compile() {
# not really an install target
emake -C kmer -j1 install || die
emake -C src -j1 SITE_NAME=LOCAL || die
}
src_install() {
OSTYPE=$(uname)
MACHTYPE=$(uname -m)
MACHTYPE=${MACHTYPE/x86_64/amd64}
MY_S="${OSTYPE}-${MACHTYPE}"
sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die
sed -i '/sub getBinDirectory/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die
sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die
dobin kmer/${MY_S}/bin/* || die
insinto /usr/$(get_libdir)/${PN}
doins kmer/${MY_S}/lib/* || die
# Collisions
# dolib.a kmer/${MY_S}/lib/* || die
insinto /usr/include/${PN}
doins kmer/${MY_S}/include/*
insinto /usr/share/${PN}
doins -r ${MY_S}/bin/spec
insinto /usr/share/${PN}/lib
doins -r ${MY_S}/bin/TIGR || die
rm -rf ${MY_S}/bin/{TIGR,spec}
dobin ${MY_S}/bin/* || die
dolib.a ${MY_S}/lib/* || die
dodoc README
}
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