* [gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-8.93.ebuild
@ 2010-10-03 11:11 99% Justin Lecher (jlec)
0 siblings, 0 replies; 1+ results
From: Justin Lecher (jlec) @ 2010-10-03 11:11 UTC (permalink / raw
To: gentoo-commits
jlec 10/10/03 11:11:56
Modified: ChangeLog
Added: t-coffee-8.93.ebuild
Log:
Version Bump, 338199
(Portage version: 2.2_rc88/cvs/Linux x86_64)
Revision Changes Path
1.43 sci-biology/t-coffee/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.43&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.43&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.42&r2=1.43
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.42
retrieving revision 1.43
diff -u -r1.42 -r1.43
--- ChangeLog 18 Jun 2010 07:55:33 -0000 1.42
+++ ChangeLog 3 Oct 2010 11:11:56 -0000 1.43
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/t-coffee
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.42 2010/06/18 07:55:33 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.43 2010/10/03 11:11:56 jlec Exp $
+
+*t-coffee-8.93 (03 Oct 2010)
+
+ 03 Oct 2010; Justin Lecher <jlec@gentoo.org> +t-coffee-8.93.ebuild:
+ Version Bump, 338199
18 Jun 2010; Justin Lecher <jlec@gentoo.org> t-coffee-8.69.ebuild:
Fix installation, #324307
1.1 sci-biology/t-coffee/t-coffee-8.93.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/t-coffee-8.93.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/t-coffee-8.93.ebuild?rev=1.1&content-type=text/plain
Index: t-coffee-8.93.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.93.ebuild,v 1.1 2010/10/03 11:11:56 jlec Exp $
EAPI="2"
inherit flag-o-matic toolchain-funcs
DESCRIPTION="A multiple sequence alignment package"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
IUSE="examples test"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
RDEPEND="sci-biology/clustalw"
DEPEND="${DEPEND}
test? ( dev-lang/perl )"
S="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
die_compile() {
echo
eerror "If you experience an internal compiler error (consult the above"
eerror "messages), try compiling t-coffee using very modest compiler flags."
eerror "See bug #114745 on the Gentoo Bugzilla for more details."
die "Compilation failed"
}
src_prepare() {
epatch "${FILESDIR}"/8.69-flags.patch
epatch "${FILESDIR}"/8.69-test.patch
}
src_compile() {
[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
emake \
CC="$(tc-getCC)" CFLAGS="${CFLAGS}" \
-C t_coffee_source || die_compile
}
src_test() {
cd "${TCDIR}"
perl bin/test.pl || die
}
src_install() {
dobin t_coffee_source/t_coffee || die "Failed to install program."
# insinto /usr/share/${PN}/lib/html
# doins html/* || die "Failed to install Web interface files."
dodoc doc/*.txt || die "Failed to install text documentation."
dohtml doc/*.htm || die "Failed to install HTML documentation."
insinto /usr/share/doc/${PF}
doins doc/*.doc || die "Failed to install DOC documentation."
if use examples; then
insinto /usr/share/${PN}
doins -r example || die "Failed to install example files."
fi
}
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