* [gentoo-commits] proj/sci:master commit in: sci-biology/Gambit/
@ 2011-05-06 11:55 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2011-05-06 11:55 UTC (permalink / raw
To: gentoo-commits
commit: 9f27b14c96909e5d20a115874ee3e5d93d536311
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri May 6 11:55:38 2011 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri May 6 11:55:38 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9f27b14c
sci-biology/Gambit: BAM file viewer
(Portage version: 2.1.9.43/git/Linux i686, unsigned Manifest commit)
---
sci-biology/Gambit/Gambit-0.4.145.ebuild | 35 ++++++++++++++++++++++++++++++
sci-biology/Gambit/metadata.xml | 9 +++++++
2 files changed, 44 insertions(+), 0 deletions(-)
diff --git a/sci-biology/Gambit/Gambit-0.4.145.ebuild b/sci-biology/Gambit/Gambit-0.4.145.ebuild
new file mode 100644
index 0000000..ebc5f62
--- /dev/null
+++ b/sci-biology/Gambit/Gambit-0.4.145.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit qt4-r2
+
+DESCRIPTION="Display genomic alignments from BAM files with annotations from BED, GFF, GFF3, VCF formats"
+HOMEPAGE="http://code.google.com/p/gambit-viewer/"
+SRC_URI="http://gambit-viewer.googlecode.com/files/Gambit_v0.4.145_src.tar.gz
+ http://gambit-viewer.googlecode.com/files/GambitDocumentation_v0.4.145.pdf"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="x11-libs/qt-core:4
+ x11-libs/qt-gui:4"
+RDEPEND="${DEPEND}
+ sci-biology/samtools"
+
+S="${WORKDIR}"/Gambit
+
+src_configure() {
+ lupdate ${PN}.pro || die
+ lrelease ${PN}.pro || die
+ eqmake4 ${PN}.pro || die
+}
+
+src_install() {
+ dobin ${PN} || die
+ dodoc "${DISTDIR}"/GambitDocumentation_v0.4.145.pdf
+}
diff --git a/sci-biology/Gambit/metadata.xml b/sci-biology/Gambit/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/Gambit/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/Gambit/
@ 2015-09-21 19:44 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2015-09-21 19:44 UTC (permalink / raw
To: gentoo-commits
commit: 6ecad09b5d5c91e20812153615ee3716e6c25ed0
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 19:38:25 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 19:38:25 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6ecad09b
sci-biology/Gambit: Handle qt correctly
Bump to EAPI 5
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/Gambit/Gambit-0.4.145.ebuild | 22 ++++++++++++----------
1 file changed, 12 insertions(+), 10 deletions(-)
diff --git a/sci-biology/Gambit/Gambit-0.4.145.ebuild b/sci-biology/Gambit/Gambit-0.4.145.ebuild
index d5a1119..8302a2b 100644
--- a/sci-biology/Gambit/Gambit-0.4.145.ebuild
+++ b/sci-biology/Gambit/Gambit-0.4.145.ebuild
@@ -1,14 +1,15 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=3
+EAPI=5
-inherit qt4-r2
+inherit qmake-utils
-DESCRIPTION="Display genomic alignments from BAM files with annotations from BED, GFF, GFF3, VCF formats"
+DESCRIPTION="Genomic alignments from BAM files with annotations from BED, GFF, GFF3, VCF formats"
HOMEPAGE="http://code.google.com/p/gambit-viewer/"
-SRC_URI="http://gambit-viewer.googlecode.com/files/Gambit_v0.4.145_src.tar.gz
+SRC_URI="
+ http://gambit-viewer.googlecode.com/files/Gambit_v0.4.145_src.tar.gz
http://gambit-viewer.googlecode.com/files/GambitDocumentation_v0.4.145.pdf"
LICENSE="GPL-2"
@@ -16,7 +17,8 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
-DEPEND="dev-qt/qtcore:4
+DEPEND="
+ dev-qt/qtcore:4
dev-qt/qtgui:4"
RDEPEND="${DEPEND}
sci-biology/samtools"
@@ -24,12 +26,12 @@ RDEPEND="${DEPEND}
S="${WORKDIR}"/Gambit
src_configure() {
- lupdate ${PN}.pro || die
- lrelease ${PN}.pro || die
- eqmake4 ${PN}.pro || die
+ $(qt4_get_bindir)/lupdate ${PN}.pro || die
+ $(qt4_get_bindir)/lrelease ${PN}.pro || die
+ eqmake4 ${PN}.pro
}
src_install() {
- dobin ${PN} || die
+ dobin ${PN}
dodoc "${DISTDIR}"/GambitDocumentation_v0.4.145.pdf
}
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/Gambit/
@ 2017-01-29 20:25 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2017-01-29 20:25 UTC (permalink / raw
To: gentoo-commits
commit: 03b89dba2de9b51e1cc3f2afb9fd937e69af5356
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 29 20:19:10 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 29 20:25:15 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=03b89dba
sci-biology/Gambit: QA fixes
Bump to EAPI 6
shorten DESCRIPTION
Add USE=doc
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/Gambit/Gambit-0.4.145.ebuild | 13 +++++++------
sci-biology/Gambit/metadata.xml | 2 +-
2 files changed, 8 insertions(+), 7 deletions(-)
diff --git a/sci-biology/Gambit/Gambit-0.4.145.ebuild b/sci-biology/Gambit/Gambit-0.4.145.ebuild
index 8302a2b..33c2efe 100644
--- a/sci-biology/Gambit/Gambit-0.4.145.ebuild
+++ b/sci-biology/Gambit/Gambit-0.4.145.ebuild
@@ -1,21 +1,22 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
inherit qmake-utils
-DESCRIPTION="Genomic alignments from BAM files with annotations from BED, GFF, GFF3, VCF formats"
+DESCRIPTION="Genomic alignments from BAM files"
HOMEPAGE="http://code.google.com/p/gambit-viewer/"
SRC_URI="
http://gambit-viewer.googlecode.com/files/Gambit_v0.4.145_src.tar.gz
- http://gambit-viewer.googlecode.com/files/GambitDocumentation_v0.4.145.pdf"
+ doc? ( http://gambit-viewer.googlecode.com/files/GambitDocumentation_v0.4.145.pdf )
+"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
+IUSE="doc"
DEPEND="
dev-qt/qtcore:4
@@ -33,5 +34,5 @@ src_configure() {
src_install() {
dobin ${PN}
- dodoc "${DISTDIR}"/GambitDocumentation_v0.4.145.pdf
+ use doc && dodoc "${DISTDIR}"/GambitDocumentation_v0.4.145.pdf
}
diff --git a/sci-biology/Gambit/metadata.xml b/sci-biology/Gambit/metadata.xml
index 1699e58..f68a1b6 100644
--- a/sci-biology/Gambit/metadata.xml
+++ b/sci-biology/Gambit/metadata.xml
@@ -5,7 +5,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
-<maintainer type="project">
+ <maintainer type="project">
<email>sci-biology@gentoo.org</email>
<name>Gentoo Biology Project</name>
</maintainer>
^ permalink raw reply related [flat|nested] 3+ messages in thread
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