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From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
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Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
Message-ID: <92c1aa1e11b3bc64bea8df928b8c0c6c0548e4a5.mmokrejs@gentoo>
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/gbrowse/
X-VCS-Repository: proj/sci
X-VCS-Files: sci-biology/gbrowse/ChangeLog sci-biology/gbrowse/gbrowse-2.38.ebuild
X-VCS-Directories: sci-biology/gbrowse/
X-VCS-Committer: mmokrejs
X-VCS-Committer-Name: Martin Mokrejs
X-VCS-Revision: 92c1aa1e11b3bc64bea8df928b8c0c6c0548e4a5
Date: Fri, 8 Jul 2011 14:00:00 +0000 (UTC)
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commit: 92c1aa1e11b3bc64bea8df928b8c0c6c0548e4a5
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DO=
T> cz>
AuthorDate: Fri Jul 8 13:59:52 2011 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DO=
T> cz>
CommitDate: Fri Jul 8 13:59:52 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc=
ommit;h=3D92c1aa1e
sci-biology/gbrowse-2.38: Documented dependency on >=3Dperl-gcpan/Text-Pa=
rseWords-3.27, documented requirement of Bio::Root::Version >=3D 1.0069
(Portage version: 2.1.10.4/git/Linux i686, unsigned Manifest commit)
---
sci-biology/gbrowse/ChangeLog | 5 +++++
sci-biology/gbrowse/gbrowse-2.38.ebuild | 3 +++
2 files changed, 8 insertions(+), 0 deletions(-)
diff --git a/sci-biology/gbrowse/ChangeLog b/sci-biology/gbrowse/ChangeLo=
g
index e36ad47..eaa41a4 100644
--- a/sci-biology/gbrowse/ChangeLog
+++ b/sci-biology/gbrowse/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/Ch=
angeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $
=20
+ 08 Jul 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ gbrowse-2.38.ebuild:
+ Added dependency on >=3Dperl-gcpan/Text-ParseWords-3.27, documented re=
quirement
+ of Bio::Root::Version >=3D 1.0069
+
*gbrowse-2.38 (26 Jun 2011)
=20
26 Jun 2011; Justin Lecher <jlec@gentoo.org> -gbrowse-2.26.ebuild,
diff --git a/sci-biology/gbrowse/gbrowse-2.38.ebuild b/sci-biology/gbrows=
e/gbrowse-2.38.ebuild
index 9cc3ce4..0d12577 100644
--- a/sci-biology/gbrowse/gbrowse-2.38.ebuild
+++ b/sci-biology/gbrowse/gbrowse-2.38.ebuild
@@ -52,9 +52,12 @@ DEPEND=3D"
# TODO: based on the following message in apache/error_log the list of d=
eps should be longer
# GBROWSE NOTICE: To enable PDF generation, please enter the directory "=
/home/httpd" and run the commands: "sudo mkdir .inkscape .gnome2" and "su=
do chown apache .inkscape .gnome2". To turn off this message add "genera=
te pdf =3D 0" to the [GENERAL] section of your GBrowse.conf configuration=
file., referer: http://127.0.0.1/gbrowse/cgi-bin/gbrowse_details/yeast?r=
ef=3DchrII;start=3D90739;end=3D92028;name=3DYBL069W;class=3DSequence;feat=
ure_id=3D881;db_id=3Dannotations%3Adatabase
=20
+# TODO: implement ebuild checks for these version of packages
+# ! Bio::Root::Version (1.006001) is installed, but we need version =
>=3D 1.0069
# * Bio::DB::BigFile is not installed
# * Bio::DB::Sam is not installed
# * DBD::Pg is not installed
+# >=3Dperl-gcpan/Text-ParseWords-3.27
=20
RDEPEND=3D"${DEPEND}
>=3Dwww-servers/apache-2.0.47