[gentoo-commits] proj/sci:master commit in: sci-biology/gbrowse/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     92c1aa1e11b3bc64bea8df928b8c0c6c0548e4a5
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul  8 13:59:52 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul  8 13:59:52 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=92c1aa1e

sci-biology/gbrowse-2.38: Documented dependency on >=perl-gcpan/Text-ParseWords-3.27, documented requirement of Bio::Root::Version >= 1.0069

(Portage version: 2.1.10.4/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/gbrowse/ChangeLog           |    5 +++++
 sci-biology/gbrowse/gbrowse-2.38.ebuild |    3 +++
 2 files changed, 8 insertions(+), 0 deletions(-)

diff --git a/sci-biology/gbrowse/ChangeLog b/sci-biology/gbrowse/ChangeLog
index e36ad47..eaa41a4 100644
--- a/sci-biology/gbrowse/ChangeLog
+++ b/sci-biology/gbrowse/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
 # $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $
 
+  08 Jul 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  gbrowse-2.38.ebuild:
+  Added dependency on >=perl-gcpan/Text-ParseWords-3.27, documented requirement
+  of Bio::Root::Version >= 1.0069
+
 *gbrowse-2.38 (26 Jun 2011)
 
   26 Jun 2011; Justin Lecher <jlec@gentoo.org> -gbrowse-2.26.ebuild,

diff --git a/sci-biology/gbrowse/gbrowse-2.38.ebuild b/sci-biology/gbrowse/gbrowse-2.38.ebuild
index 9cc3ce4..0d12577 100644
--- a/sci-biology/gbrowse/gbrowse-2.38.ebuild
+++ b/sci-biology/gbrowse/gbrowse-2.38.ebuild
@@ -52,9 +52,12 @@ DEPEND="
 # TODO: based on the following message in apache/error_log the list of deps should be longer
 # GBROWSE NOTICE: To enable PDF generation, please enter the directory "/home/httpd" and run the commands: "sudo mkdir .inkscape .gnome2" and "sudo chown apache .inkscape .gnome2".  To turn off this message add "generate pdf = 0" to the [GENERAL] section of your GBrowse.conf configuration file., referer: http://127.0.0.1/gbrowse/cgi-bin/gbrowse_details/yeast?ref=chrII;start=90739;end=92028;name=YBL069W;class=Sequence;feature_id=881;db_id=annotations%3Adatabase
 
+# TODO: implement ebuild checks for these version of packages
+#    !  Bio::Root::Version (1.006001) is installed, but we need version >= 1.0069
 #    *  Bio::DB::BigFile is not installed
 #    *  Bio::DB::Sam is not installed
 #    *  DBD::Pg is not installed
+#    >=perl-gcpan/Text-ParseWords-3.27
 
 RDEPEND="${DEPEND}
 	>=www-servers/apache-2.0.47