[gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/, sci-mathematics/Macaulay2/files/

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* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/, sci-mathematics/Macaulay2/files/
@ 2011-07-08 11:17 Thomas Kahle
  0 siblings, 0 replies; 5+ messages in thread
From: Thomas Kahle @ 2011-07-08 11:17 UTC (permalink / raw
  To: gentoo-commits

commit:     9151dea2ac3c386ffe6a5c8244f22d649478c518
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Fri Jul  8 11:17:12 2011 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Fri Jul  8 11:17:12 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9151dea2

Removed old version and fixed deps of live version

(Portage version: 2.1.10.4/git/Linux i686, signed Manifest commit with key 0x914769A1)

---
 sci-mathematics/Macaulay2/ChangeLog                |    5 +
 .../Macaulay2/Macaulay2-1.3.1-r4.ebuild            |  135 --------------------
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild    |    2 +-
 .../files/1.4-paths-of-external-programs.patch     |   61 ---------
 .../Macaulay2/files/respect-CFLAGS.patch           |   14 --
 5 files changed, 6 insertions(+), 211 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 1b3395e..80813e5 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  08 Jul 2011; Thomas Kahle <tomka@gentoo.org>
+  -files/1.4-paths-of-external-programs.patch, -Macaulay2-1.3.1-r4.ebuild,
+  Macaulay2-9999.ebuild, -files/respect-CFLAGS.patch:
+  Removed old, fixed deps of live version
+
   07 Mar 2011; Justin Lecher <jlec@gentoo.org> Macaulay2-1.3.1-r4.ebuild,
   Macaulay2-9999.ebuild:
   Correct Slots for gtk 3 introduction to tree

diff --git a/sci-mathematics/Macaulay2/Macaulay2-1.3.1-r4.ebuild b/sci-mathematics/Macaulay2/Macaulay2-1.3.1-r4.ebuild
deleted file mode 100644
index 6df19f4..0000000
--- a/sci-mathematics/Macaulay2/Macaulay2-1.3.1-r4.ebuild
+++ /dev/null
@@ -1,135 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="2"
-
-inherit autotools elisp-common eutils
-
-MY_REV="r10737"
-
-DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
-HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
-SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
-SRC_URI="
-	${SRC_BASE}/SourceCode/Macaulay2-${PV}-${MY_REV}.bz2 -> ${P}.tar.bz2
-	${SRC_BASE}/OtherSourceCode/1.3/factory-3-1-0.tar.gz
-	${SRC_BASE}/OtherSourceCode/1.3/libfac-3-1-0.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86"
-IUSE="emacs optimization"
-
-DEPEND="
-	sys-libs/gdbm
-	>=dev-libs/ntl-5.5.2
-	>=dev-libs/boehm-gc-7.1
-	>=sci-mathematics/pari-2.3.4[gmp]
-	>=sys-libs/readline-6.0
-	dev-libs/libxml2:2
-	sci-mathematics/frobby
-	sci-mathematics/4ti2
-	<sci-mathematics/normaliz-2.5
-	sci-mathematics/gfan
-	>=dev-libs/mpfr-2.4.1
-	>=sci-libs/mpir-1.3.1[cxx]
-	virtual/blas
-	virtual/lapack
-	dev-util/ctags
-	sys-libs/ncurses
-	sys-process/time
-	emacs? ( virtual/emacs )"
-RDEPEND="${DEPEND}"
-
-SITEFILE=70Macaulay2-gentoo.el
-
-S="${WORKDIR}/${PN}-${PV}-${MY_REV}"
-
-RESTRICT="mirror"
-
-pkg_setup () {
-		tc-export CC CPP CXX
-}
-
-src_prepare() {
-	# Patching .m2 files to look for external programs in
-	# /usr/bin
-	epatch "${FILESDIR}"/paths-of-dependencies.patch
-
-	if ! use optimization ; then
-		epatch "${FILESDIR}"/respect-CFLAGS.patch
-	fi
-
-	# Fixing make warnings about unavailable jobserver:
-	sed -i "s/\$(MAKE)/+ \$(MAKE)/g" "${S}"/distributions/Makefile.in
-
-	# Factory and libfac are statically linked libraries which (in this flavor)
-	# are not used by any other program. We build them internally and don't install them
-	# Permission was granted to tomka by bicatali on IRC.
-	mkdir "${S}/BUILD/tarfiles" || die "Creation of directory failed"
-	cp "${DISTDIR}/factory-3-1-0.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
-	cp "${DISTDIR}/libfac-3-1-0.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
-
-	eautoreconf
-}
-
-src_configure (){
-
-	# Recommended in bug #268064 Possibly unecessary
-	# but should not hurt anybody.
-	if ! use emacs; then
-		tags="ctags"
-	fi
-
-	CPPFLAGS="-I/usr/include/frobby" \
-		./configure --prefix="${D}/usr" \
-		--disable-encap \
-		--disable-strip \
-		--enable-build-libraries="factory libfac" \
-		--with-unbuilt-programs="4ti2 gfan normaliz" \
-		|| die "failed to configure Macaulay"
-}
-
-src_compile() {
-	# Parallel build not supported yet
-	emake -j1 || die "failed to build Macaulay"
-
-	if use emacs; then
-		cd "${S}/Macaulay2/emacs"
-		elisp-compile *.el || die "elisp-compile failed"
-	fi
-}
-
-src_test() {
-	emake check || die "tests failed"
-}
-
-src_install () {
-	# Parallel install not supported yet
-	emake -j1 install || die "install failed"
-
-	# Remove emacs files and install them in the
-	# correct place if use emacs
-
-	rm -rf "${D}"/usr/share/emacs/site-lisp
-	if use emacs; then
-		cd "${S}/Macaulay2/emacs"
-		elisp-install ${PN} *.elc *.el || die "elisp-install failed"
-		elisp-site-file-install "${FILESDIR}/${SITEFILE}"
-	fi
-}
-
-pkg_postinst() {
-	if use emacs; then
-		elisp-site-regen
-		elog "If you want to set a hot key for Macaulay2 in Emacs add a line similar to"
-		elog "(global-set-key [ f12 ] 'M2)"
-		elog "in order to set it to F12 (or choose a different one)."
-	fi
-}
-pkg_postrm() {
-	use emacs && elisp-site-regen
-}

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index fd77a71..67c914a 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -30,7 +30,7 @@ DEPEND="
 	sci-mathematics/frobby
 	sci-mathematics/4ti2
 	sci-mathematics/nauty
-	>=sci-mathematics/normaliz-2.5
+	>=sci-mathematics/normaliz-2.7
 	sci-mathematics/gfan
 	>=dev-libs/mpfr-3.0.0
 	>=sci-libs/mpir-2.1.1[cxx]

diff --git a/sci-mathematics/Macaulay2/files/1.4-paths-of-external-programs.patch b/sci-mathematics/Macaulay2/files/1.4-paths-of-external-programs.patch
deleted file mode 100644
index 9b16e5a..0000000
--- a/sci-mathematics/Macaulay2/files/1.4-paths-of-external-programs.patch
+++ /dev/null
@@ -1,61 +0,0 @@
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/FourTiTwo.m2 M2source.patches/Macaulay2/packages/FourTiTwo.m2
---- M2source.orig/Macaulay2/packages/FourTiTwo.m2	2010-09-19 02:32:45.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/FourTiTwo.m2	2010-09-19 02:37:25.000000000 +0200
-@@ -47,7 +47,7 @@
- 
- path'4ti2 = (options FourTiTwo).Configuration#"path"
- -- NOTE: the absolute path should be put into the .init file for 4ti2 inside the .Macaulay2 directory.
--if path'4ti2 == "" then path'4ti2 = prefixDirectory | currentLayout#"programs"
-+if path'4ti2 == "" then path'4ti2 = "/usr/bin/"
- 
- getFilename = () -> (
-      filename := temporaryFileName();
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/gfanInterface.m2 M2source.patches/Macaulay2/packages/gfanInterface.m2
---- M2source.orig/Macaulay2/packages/gfanInterface.m2	2010-09-19 02:32:45.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/gfanInterface.m2	2010-09-19 02:38:08.000000000 +0200
-@@ -26,7 +26,7 @@
-      }
- 
- gfan'path = gfanInterface#Options#Configuration#"path"
--if gfan'path == "" then gfan'path = prefixDirectory | currentLayout#"programs"
-+if gfan'path == "" then gfan'path = "/usr/bin/"
- if instance(gfan'path, String) then gfan'path = {gfan'path}
- if not instance(gfan'path,List) then error "expected configuration option gfan'path to be a list of strings or a string"
- gfan'path = join(
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/Nauty.m2 M2source.patches/Macaulay2/packages/Nauty.m2
---- M2source.orig/Macaulay2/packages/Nauty.m2	2010-09-19 02:33:04.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/Nauty.m2	2010-09-19 02:40:46.000000000 +0200
-@@ -27,7 +27,8 @@
- -- Check the ~/.Macaulay2/init-Nauty.m2 file for the absolute path.
- -- If it's not there, then use the M2-Programs directory.
- nauty'path = (options Nauty).Configuration#"path";
--if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs";
-+if nauty'path == "" then nauty'path = "/usr/bin/";
-+
- 
- -------------------
- -- Exports
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/Normaliz.m2 M2source.patches/Macaulay2/packages/Normaliz.m2
---- M2source.orig/Macaulay2/packages/Normaliz.m2	2010-09-19 02:33:04.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/Normaliz.m2	2010-09-19 02:39:12.000000000 +0200
-@@ -156,7 +156,7 @@
-         nmzExec="norm64";
-     );
- --    return nmzExec;
--    return prefixDirectory | currentLayout#"programs" | nmzExec;
-+    return "/usr/bin/" | nmzExec;
- );
- 
- 
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/StatePolytope.m2 M2source.patches/Macaulay2/packages/StatePolytope.m2
---- M2source.orig/Macaulay2/packages/StatePolytope.m2	2010-09-19 02:32:46.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/StatePolytope.m2	2010-09-19 02:38:39.000000000 +0200
-@@ -31,7 +31,7 @@
- 
- 
- gfanCommand = (options StatePolytope)#Configuration#"gfan command"
--if gfanCommand === "gfan" then gfanCommand = prefixDirectory | currentLayout#"programs" | gfanCommand
-+if gfanCommand === "gfan" then gfanCommand = "/usr/bin/" | gfanCommand
- gfanCommand = "!" | gfanCommand
- 
- --The next two functions print out the ring and the ideal in the format required by gfan

diff --git a/sci-mathematics/Macaulay2/files/respect-CFLAGS.patch b/sci-mathematics/Macaulay2/files/respect-CFLAGS.patch
deleted file mode 100644
index f774f60..0000000
--- a/sci-mathematics/Macaulay2/files/respect-CFLAGS.patch
+++ /dev/null
@@ -1,14 +0,0 @@
---- configure.ac.orig	2010-07-12 20:13:09.000000000 +0200
-+++ configure.ac	2010-07-12 20:13:20.000000000 +0200
-@@ -193,11 +193,6 @@
- else M2_CPPFLAGS="$M2_CPPFLAGS -DNDEBUG"
- fi
- 
--if test "$OPTIMIZE" = yes
--then CFLAGS="$CFLAGS -O3"
--     CXXFLAGS="$CFLAGS -O3"
--fi
--
- AC_PROG_CC() 			# set CFLAGS before this
- AC_SUBST(GCC)			# gets set to yes or no by AC_PROG_CC
- AC_PROG_CXX()			# set CXXFLAGS before this



^ permalink raw reply related	[flat|nested] 5+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/, sci-mathematics/Macaulay2/files/
@ 2011-09-25  7:27 Thomas Kahle
  0 siblings, 0 replies; 5+ messages in thread
From: Thomas Kahle @ 2011-09-25  7:27 UTC (permalink / raw
  To: gentoo-commits

commit:     a4f1d8df2ba524786c87e9ca85ec66b37fbd6431
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 25 07:25:25 2011 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Sun Sep 25 07:27:46 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a4f1d8df

Fix live ebuild

(Portage version: 2.1.10.19/git/Linux i686, signed Manifest commit with key 0x20F2A3AE)

---
 sci-mathematics/Macaulay2/ChangeLog                |    4 ++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild    |    8 ++--
 .../files/9999-paths-of-external-programs.patch    |   50 ++++++++++++-------
 3 files changed, 39 insertions(+), 23 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index e3e7937..ab9d8e8 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  25 Sep 2011; Thomas Kahle <tomka@gentoo.org>
+  files/9999-paths-of-external-programs.patch, Macaulay2-9999.ebuild:
+  Fix live ebuild
+
   09 Aug 2011; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   adjusting boehm-gc source file
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index e4aa03c..e313f60 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -13,8 +13,8 @@ ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
-SRC_URI="${SRC_BASE}/OtherSourceCode/1.3/factory-3-1-1.tar.gz
-		 ${SRC_BASE}/OtherSourceCode/1.3/libfac-3-1-1.tar.gz
+SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/libfac-3-1-3.tar.gz
+		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-3-1-3.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Extra/gc-7.2alpha7-2011-07-25.tar.gz"
 
 SLOT="0"
@@ -67,9 +67,9 @@ src_prepare() {
 	# Factory, and libfac are statically linked libraries which (in this flavor) are not used by any
 	# other program. We build them internally and don't install them
 	mkdir "${S}/BUILD/tarfiles" || die "Creation of directory failed"
-	cp "${DISTDIR}/factory-3-1-1.tar.gz" "${S}/BUILD/tarfiles/" \
+	cp "${DISTDIR}/factory-3-1-3.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	cp "${DISTDIR}/libfac-3-1-1.tar.gz" "${S}/BUILD/tarfiles/" \
+	cp "${DISTDIR}/libfac-3-1-3.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 	# Macaulay 2 insists on a snapshot of boehm-gc that is not available elsewhere
 	# We will let it build its internal version for now.  Note:

diff --git a/sci-mathematics/Macaulay2/files/9999-paths-of-external-programs.patch b/sci-mathematics/Macaulay2/files/9999-paths-of-external-programs.patch
index 9b16e5a..4c090de 100644
--- a/sci-mathematics/Macaulay2/files/9999-paths-of-external-programs.patch
+++ b/sci-mathematics/Macaulay2/files/9999-paths-of-external-programs.patch
@@ -1,6 +1,6 @@
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/FourTiTwo.m2 M2source.patches/Macaulay2/packages/FourTiTwo.m2
---- M2source.orig/Macaulay2/packages/FourTiTwo.m2	2010-09-19 02:32:45.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/FourTiTwo.m2	2010-09-19 02:37:25.000000000 +0200
+diff -U 3 -dHrN M2source/Macaulay2/packages/FourTiTwo.m2 M2source.patch/Macaulay2/packages/FourTiTwo.m2
+--- M2source/Macaulay2/packages/FourTiTwo.m2	2011-09-22 14:36:51.000000000 +0100
++++ M2source.patch/Macaulay2/packages/FourTiTwo.m2	2011-09-24 21:24:12.000000000 +0100
 @@ -47,7 +47,7 @@
  
  path'4ti2 = (options FourTiTwo).Configuration#"path"
@@ -10,10 +10,10 @@ diff -U 3 -dHrN M2source.orig/Macaulay2/packages/FourTiTwo.m2 M2source.patches/M
  
  getFilename = () -> (
       filename := temporaryFileName();
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/gfanInterface.m2 M2source.patches/Macaulay2/packages/gfanInterface.m2
---- M2source.orig/Macaulay2/packages/gfanInterface.m2	2010-09-19 02:32:45.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/gfanInterface.m2	2010-09-19 02:38:08.000000000 +0200
-@@ -26,7 +26,7 @@
+diff -U 3 -dHrN M2source/Macaulay2/packages/gfanInterface.m2 M2source.patch/Macaulay2/packages/gfanInterface.m2
+--- M2source/Macaulay2/packages/gfanInterface.m2	2011-05-14 12:00:59.000000000 +0100
++++ M2source.patch/Macaulay2/packages/gfanInterface.m2	2011-09-24 21:24:12.000000000 +0100
+@@ -25,7 +25,7 @@
       }
  
  gfan'path = gfanInterface#Options#Configuration#"path"
@@ -22,10 +22,22 @@ diff -U 3 -dHrN M2source.orig/Macaulay2/packages/gfanInterface.m2 M2source.patch
  if instance(gfan'path, String) then gfan'path = {gfan'path}
  if not instance(gfan'path,List) then error "expected configuration option gfan'path to be a list of strings or a string"
  gfan'path = join(
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/Nauty.m2 M2source.patches/Macaulay2/packages/Nauty.m2
---- M2source.orig/Macaulay2/packages/Nauty.m2	2010-09-19 02:33:04.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/Nauty.m2	2010-09-19 02:40:46.000000000 +0200
-@@ -27,7 +27,8 @@
+diff -U 3 -dHrN M2source/Macaulay2/packages/NautyGraphs.m2 M2source.patch/Macaulay2/packages/NautyGraphs.m2
+--- M2source/Macaulay2/packages/NautyGraphs.m2	2011-08-26 11:05:30.000000000 +0100
++++ M2source.patch/Macaulay2/packages/NautyGraphs.m2	2011-09-24 21:25:53.000000000 +0100
+@@ -32,7 +32,7 @@
+ -- Check the ~/.Macaulay2/init-NautyGraphs.m2 file for the absolute path.
+ -- If it's not there, then use the M2-Programs directory.
+ nauty'path = (options NautyGraphs).Configuration#"path";
+-if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs";
++if nauty'path == "" then nauty'path = "/usr/bin/";
+ 
+ -------------------
+ -- Exports
+diff -U 3 -dHrN M2source/Macaulay2/packages/Nauty.m2 M2source.patch/Macaulay2/packages/Nauty.m2
+--- M2source/Macaulay2/packages/Nauty.m2	2011-08-26 11:05:30.000000000 +0100
++++ M2source.patch/Macaulay2/packages/Nauty.m2	2011-09-24 21:24:12.000000000 +0100
+@@ -48,7 +48,8 @@
  -- Check the ~/.Macaulay2/init-Nauty.m2 file for the absolute path.
  -- If it's not there, then use the M2-Programs directory.
  nauty'path = (options Nauty).Configuration#"path";
@@ -35,11 +47,11 @@ diff -U 3 -dHrN M2source.orig/Macaulay2/packages/Nauty.m2 M2source.patches/Macau
  
  -------------------
  -- Exports
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/Normaliz.m2 M2source.patches/Macaulay2/packages/Normaliz.m2
---- M2source.orig/Macaulay2/packages/Normaliz.m2	2010-09-19 02:33:04.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/Normaliz.m2	2010-09-19 02:39:12.000000000 +0200
-@@ -156,7 +156,7 @@
-         nmzExec="norm64";
+diff -U 3 -dHrN M2source/Macaulay2/packages/Normaliz.m2 M2source.patch/Macaulay2/packages/Normaliz.m2
+--- M2source/Macaulay2/packages/Normaliz.m2	2011-05-25 16:47:50.000000000 +0100
++++ M2source.patch/Macaulay2/packages/Normaliz.m2	2011-09-24 21:24:12.000000000 +0100
+@@ -166,7 +166,7 @@
+         nmzExec="normaliz";
      );
  --    return nmzExec;
 -    return prefixDirectory | currentLayout#"programs" | nmzExec;
@@ -47,9 +59,9 @@ diff -U 3 -dHrN M2source.orig/Macaulay2/packages/Normaliz.m2 M2source.patches/Ma
  );
  
  
-diff -U 3 -dHrN M2source.orig/Macaulay2/packages/StatePolytope.m2 M2source.patches/Macaulay2/packages/StatePolytope.m2
---- M2source.orig/Macaulay2/packages/StatePolytope.m2	2010-09-19 02:32:46.000000000 +0200
-+++ M2source.patches/Macaulay2/packages/StatePolytope.m2	2010-09-19 02:38:39.000000000 +0200
+diff -U 3 -dHrN M2source/Macaulay2/packages/StatePolytope.m2 M2source.patch/Macaulay2/packages/StatePolytope.m2
+--- M2source/Macaulay2/packages/StatePolytope.m2	2010-09-10 16:47:20.000000000 +0100
++++ M2source.patch/Macaulay2/packages/StatePolytope.m2	2011-09-24 21:24:12.000000000 +0100
 @@ -31,7 +31,7 @@
  
  



^ permalink raw reply related	[flat|nested] 5+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/, sci-mathematics/Macaulay2/files/
@ 2012-10-30 23:10 Thomas Kahle
  0 siblings, 0 replies; 5+ messages in thread
From: Thomas Kahle @ 2012-10-30 23:10 UTC (permalink / raw
  To: gentoo-commits

commit:     a68938418595c2b6af6ac6f61fa5336d6e8e86fc
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 30 23:10:17 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Tue Oct 30 23:10:27 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a6893841

Fix linking against arbitrary lapack implementation

Package-Manager: portage-2.1.11.31

---
 sci-mathematics/Macaulay2/ChangeLog               |    4 ++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild   |    6 ++-
 sci-mathematics/Macaulay2/files/9999-lapack.patch |   50 +++++++++++++++++++++
 3 files changed, 59 insertions(+), 1 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 14895a0..2619c70 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  30 Oct 2012; Thomas Kahle <tomka@gentoo.org> +files/9999-lapack.patch,
+  Macaulay2-9999.ebuild:
+  Fix linking against arbitrary lapack implementation
+
   24 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Update M2 live ebuild
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index a9ae846..72b4584 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -54,7 +54,8 @@ DEPEND="
 	sys-process/time
 	>=dev-libs/boehm-gc-7.2_alpha6[threads]
 	dev-libs/libatomic_ops
-	emacs? ( virtual/emacs )"
+	emacs? ( virtual/emacs )
+	virtual/pkgconfig"
 RDEPEND="${DEPEND}"
 
 SITEFILE=70Macaulay2-gentoo.el
@@ -78,6 +79,9 @@ src_prepare() {
 	# Fixing make warnings about unavailable jobserver:
 	sed -i "s/\$(MAKE)/+ \$(MAKE)/g" "${S}"/distributions/Makefile.in
 
+	# Shortcircuit lapack tests
+	epatch "${FILESDIR}"/${PV}-lapack.patch
+
 	# Factory, and libfac are statically linked libraries which (in this flavor) are not used by any
 	# other program. We build them internally and don't install them
 	mkdir "${S}/BUILD/tarfiles" || die "Creation of directory failed"

diff --git a/sci-mathematics/Macaulay2/files/9999-lapack.patch b/sci-mathematics/Macaulay2/files/9999-lapack.patch
new file mode 100644
index 0000000..3798253
--- /dev/null
+++ b/sci-mathematics/Macaulay2/files/9999-lapack.patch
@@ -0,0 +1,50 @@
+--- configure.ac	2012-10-24 09:29:55.240498786 -0700
++++ configure.ac.2	2012-10-30 15:07:27.172846300 -0700
+@@ -1285,46 +1285,7 @@
+ done
+ test $BUILD_factory = yes && BUILTLIBS="$SINGULARLIBS $BUILTLIBS"
+ 
+-# we need to do the fortran library testing last, in case AC_SEARCH_LIBS adds
+-# one of them to $LIBS, making it impossible to check for the presence of C or
+-# C++ libraries.  (I'm not sure why putting -llapack on the gcc command line
+-# needlessly causes the library to be linked against.)
+-FORTRANUSED=no
+-if test "$LAPACK" = yes
+-then AC_MSG_CHECKING([whether the vecLib framework is available])
+-     SAVELIBS=$LIBS LIBS="-framework vecLib $LIBS"
+-     AC_LANG(C)
+-     AC_LINK_IFELSE(
+-	 [AC_LANG_PROGRAM(,[sgemv_();dgetrf_();])],
+-	 [
+-	     AC_MSG_RESULT(yes)
+-	     ],
+-	 [
+-	     AC_MSG_RESULT(no)
+-	     LIBS=$SAVELIBS
+-	     FORTRANUSED=yes
+-	     if test $BUILD_lapack = no
+-	     then AC_LANG(Fortran)
+-	     	  if test "$FC" = ""
+-		  then AC_MSG_ERROR(no fortran compiler found)
+-		  else AC_MSG_NOTICE(using fortran compiler $FC)
+-		  fi
+-		  AC_SEARCH_LIBS(sgemv,blas f77blas,,BUILD_lapack=yes)
+-		  AC_SEARCH_LIBS(dgetrf,lapack,,BUILD_lapack=yes)
+-	     fi
+-	 ])
+-fi
+-test $BUILD_lapack = yes && BUILTLIBS="-llapack -lblas $BUILTLIBS"
+-
+-if test $BUILD_lapack = yes
+-then # test whether the fortran compiler can handle lapack, which, starting with
+-     # version 3.2, requires fortran 90, not fortran 77
+-    AC_LANG(Fortran)
+-    AC_MSG_CHECKING([whether the fortran compiler is modern enough for lapack])
+-    AC_COMPILE_IFELSE([instrinsic maxloc],
+-	AC_MSG_ERROR(the fortran compiler ($FC) does not support the Fortran 90 language required for compiling lapack),
+-	AC_MSG_RESULT(yes))
+-fi
++BUILTLIBS="$(pkg-config --libs lapack) $BUILTLIBS"
+ 
+ if test $BUILD_memtailor = yes
+ then BUILTLIBS="-lmemtailor $BUILTLIBS"


^ permalink raw reply related	[flat|nested] 5+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/, sci-mathematics/Macaulay2/files/
@ 2013-02-27 17:23 Justin Lecher
  0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2013-02-27 17:23 UTC (permalink / raw
  To: gentoo-commits

commit:     303b4c8da495c7a33795a7b3caff4edcc09d4d55
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Feb 27 17:05:10 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Feb 27 17:05:10 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=303b4c8d

sci-mathematics/Macaulay2: Use PKG_CONFIG instead of generic pkg-config

Package-Manager: portage-2.2.0_alpha163

---
 sci-mathematics/Macaulay2/ChangeLog               |    4 ++++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild   |    1 +
 sci-mathematics/Macaulay2/files/9999-lapack.patch |    2 +-
 3 files changed, 6 insertions(+), 1 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index ec1c9af..e164ec1 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  27 Feb 2013; Justin Lecher <jlec@gentoo.org> files/9999-lapack.patch,
+  Macaulay2-9999.ebuild:
+  Use PKG_CONFIG instead of generic pkg-config
+
   22 Feb 2013; Justin Lecher <jlec@gentoo.org> Macaulay2-9999.ebuild,
   metadata.xml:
   Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config#

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index b182641..b25ac45 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -82,6 +82,7 @@ pkg_setup () {
 }
 
 src_prepare() {
+	tc-export PKG_CONFIG
 	# Put updated Normaliz.m2 in place
 	cp "${WORKDIR}/Normaliz2.8/Macaulay2/Normaliz.m2" \
 		"${S}/Macaulay2/packages" || die

diff --git a/sci-mathematics/Macaulay2/files/9999-lapack.patch b/sci-mathematics/Macaulay2/files/9999-lapack.patch
index 3798253..e9a434e 100644
--- a/sci-mathematics/Macaulay2/files/9999-lapack.patch
+++ b/sci-mathematics/Macaulay2/files/9999-lapack.patch
@@ -44,7 +44,7 @@
 -	AC_MSG_ERROR(the fortran compiler ($FC) does not support the Fortran 90 language required for compiling lapack),
 -	AC_MSG_RESULT(yes))
 -fi
-+BUILTLIBS="$(pkg-config --libs lapack) $BUILTLIBS"
++BUILTLIBS="$(${PKG_CONFIG} --libs lapack) $BUILTLIBS"
  
  if test $BUILD_memtailor = yes
  then BUILTLIBS="-lmemtailor $BUILTLIBS"


^ permalink raw reply related	[flat|nested] 5+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/, sci-mathematics/Macaulay2/files/
@ 2021-02-01  6:31 Andrew Ammerlaan
  0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-02-01  6:31 UTC (permalink / raw
  To: gentoo-commits

commit:     1331916dfa9c5dfa3956973cdf12ad37c4c19634
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Feb  1 06:30:24 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Feb  1 06:30:24 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1331916d

sci-mathematics/Macaulay: remove pack, py2 only

build system explicitly looks for py2

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild    | 178 ---------------------
 .../Macaulay2/files/70Macaulay2-gentoo.el          |  11 --
 sci-mathematics/Macaulay2/files/9999-lapack.patch  |  50 ------
 .../files/9999-paths-of-external-programs.patch    |  73 ---------
 .../Macaulay2/files/paths-of-dependencies.patch    |  48 ------
 sci-mathematics/Macaulay2/metadata.xml             |  15 --
 6 files changed, 375 deletions(-)

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
deleted file mode 100644
index 5b4e608c7..000000000
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ /dev/null
@@ -1,178 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit autotools elisp-common flag-o-matic git-r3 python-single-r1 toolchain-funcs
-
-FACTORY="factory-4.0.0+m4"
-FACTORY_GFTABLES="factory.4.0.1-gftables"
-
-DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
-HOMEPAGE="https://faculty.math.illinois.edu/Macaulay2"
-BASE_URI="https://faculty.math.illinois.edu/Macaulay2/Downloads/OtherSourceCode/"
-SRC_URI="
-	${BASE_URI}/${FACTORY}.tar.gz
-	${BASE_URI}/${FACTORY_GFTABLES}.tar.gz
-	${BASE_URI}/gtest-1.7.0.tar.gz"
-EGIT_REPO_URI="git://github.com/Macaulay2/M2.git"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS=""
-IUSE="debug emacs +optimization"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="${PYTHON_DEPS}
-	sys-process/time
-	virtual/pkgconfig
-	app-arch/unzip
-	app-text/dos2unix"
-# Unzip and dos2unix just for normaliz
-
-RDEPEND="${PYTHON_DEPS}
-	sys-libs/gdbm
-	dev-libs/ntl
-	sci-mathematics/pari[gmp]
-	>=sys-libs/readline-6.1
-	dev-libs/libxml2:2
-	sci-mathematics/flint[gc(-)]
-	sci-mathematics/frobby
-	sci-mathematics/4ti2
-	sci-mathematics/nauty
-	>=sci-mathematics/normaliz-2.8
-	sci-mathematics/gfan
-	sci-libs/mpir[cxx]
-	dev-libs/mpfr
-	sci-libs/cdd+
-	sci-libs/cddlib
-	sci-libs/lrslib[gmp]
-	virtual/blas
-	virtual/lapack
-	dev-util/ctags
-	sys-libs/ncurses
-	>=dev-libs/boehm-gc-7.2_alpha6[threads]
-	dev-libs/libatomic_ops
-	emacs? ( app-editors/emacs )"
-
-SITEFILE=70Macaulay2-gentoo.el
-
-S="${WORKDIR}/${PN}-${PV}/"
-
-RESTRICT="mirror"
-
-src_unpack (){
-	# unpack "Normaliz2.8.zip"
-	git-r3_src_unpack
-	# Undo one level of directory until git allows to checkout
-	# subdirectories
-	mv "${S}"/M2/* "${S}" || die
-	# Need to get rid of this now because install wants this location later
-	rm -r "${S}/M2" || die
-}
-
-pkg_setup () {
-	tc-export CC CPP CXX PKG_CONFIG
-	append-cppflags "-I/usr/include/frobby"
-	# gtest needs python:2
-	python-single-r1_pkg_setup
-}
-
-src_prepare() {
-	# Put updated Normaliz.m2 in place
-	# cp "${WORKDIR}/Normaliz2.8/Macaulay2/Normaliz.m2" \
-	# 	"${S}/Macaulay2/packages" || die
-	# dos2unix "${S}/Macaulay2/packages/Normaliz.m2" || die
-
-	# Patching .m2 files to look for external programs in
-	# /usr/bin
-	eapply "${FILESDIR}"/${PV}-paths-of-external-programs.patch
-
-	# Shortcircuit lapack tests
-	eapply "${FILESDIR}"/${PV}-lapack.patch
-
-	eapply_user
-
-	# Factory is a statically linked library which (in this flavor) are not used by any
-	# other program. We build it internally and don't install it.
-	cp "${DISTDIR}/${FACTORY}.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
-	cp "${DISTDIR}/${FACTORY_GFTABLES}.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
-	# Macaulay2 developers want that gtest is built internally because
-	# the documentation says it may fail if build with options not the
-	# same as the tested program.
-	cp "${DISTDIR}/gtest-1.7.0.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
-
-	eautoreconf
-}
-
-src_configure (){
-	# Recommended in bug #268064 Possibly unecessary
-	# but should not hurt anybody.
-	if ! use emacs; then
-		tags="ctags"
-	fi
-
-	# configure instead of econf to enable install with --prefix
-	./configure LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" \
-		--prefix="${D}/usr" \
-		--disable-encap \
-		--disable-strip \
-		--with-issue=Gentoo \
-		$(use_enable optimization optimize) \
-		$(use_enable debug) \
-		--enable-build-libraries="factory" \
-		--with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \
-		|| die "failed to configure Macaulay"
-}
-
-src_compile() {
-	# Parallel build not supported yet
-	# emake -j1
-	# For trunk builds we may wish to ignore example errors
-	emake IgnoreExampleErrors=true -j1
-
-	if use emacs; then
-		cd "${S}/Macaulay2/emacs" || die
-		elisp-compile *.el
-	fi
-}
-
-src_test() {
-	# No parallel tests yet & Need to increase the time
-	# limit for long running tests in Schubert2 to pass
-	emake TLIMIT=550 -j1 check
-}
-
-src_install () {
-	# Parallel install not supported yet
-	# NumericalAlgebraicGeometry fails (during install too?)
-	emake IgnoreExampleErrors=true -j1 install
-
-	# Remove emacs files and install them in the
-	# correct place if use emacs
-	rm -rf "${ED}"/usr/share/emacs/site-lisp || die
-	if use emacs; then
-		cd "${S}/Macaulay2/emacs" || die
-		elisp-install ${PN} *.elc *.el
-		elisp-site-file-install "${FILESDIR}/${SITEFILE}"
-	fi
-}
-
-pkg_postinst() {
-	if use emacs; then
-		elisp-site-regen
-		elog "If you want to set a hot key for Macaulay2 in Emacs add a line similar to"
-		elog "(global-set-key [ f12 ] 'M2)"
-		elog "in order to set it to F12 (or choose a different one)."
-	fi
-}
-
-pkg_postrm() {
-	use emacs && elisp-site-regen
-}

diff --git a/sci-mathematics/Macaulay2/files/70Macaulay2-gentoo.el b/sci-mathematics/Macaulay2/files/70Macaulay2-gentoo.el
deleted file mode 100644
index ac86e2132..000000000
--- a/sci-mathematics/Macaulay2/files/70Macaulay2-gentoo.el
+++ /dev/null
@@ -1,11 +0,0 @@
-;; sci-mathematics/Macaulay2 init file
-
-(add-to-list 'load-path "/usr/share/emacs/site-lisp/Macaulay2")
-
-(defvar M2-exe "/usr/bin/M2" "*The default Macaulay2 executable name.")
-(autoload 'M2 "M2.el" "Run Macaulay 2 in a buffer." t)
-(autoload 'Macaulay2 "M2" "Run Macaulay 2 in a buffer, non-interactive." t)
-(autoload 'M2-mode "M2" "Macaulay 2 editing mode" t)
-(autoload 'm2-mode "M2" "Macaulay 2 editing mode, name in lower case" t)
-(autoload 'm2-comint-mode "M2" "Macaulay 2 command interpreter mode, name in lower case" t)
-(setq auto-mode-alist (append auto-mode-alist '(("\\.m2$" . M2-mode))))
\ No newline at end of file

diff --git a/sci-mathematics/Macaulay2/files/9999-lapack.patch b/sci-mathematics/Macaulay2/files/9999-lapack.patch
deleted file mode 100644
index e9a434eeb..000000000
--- a/sci-mathematics/Macaulay2/files/9999-lapack.patch
+++ /dev/null
@@ -1,50 +0,0 @@
---- configure.ac	2012-10-24 09:29:55.240498786 -0700
-+++ configure.ac.2	2012-10-30 15:07:27.172846300 -0700
-@@ -1285,46 +1285,7 @@
- done
- test $BUILD_factory = yes && BUILTLIBS="$SINGULARLIBS $BUILTLIBS"
- 
--# we need to do the fortran library testing last, in case AC_SEARCH_LIBS adds
--# one of them to $LIBS, making it impossible to check for the presence of C or
--# C++ libraries.  (I'm not sure why putting -llapack on the gcc command line
--# needlessly causes the library to be linked against.)
--FORTRANUSED=no
--if test "$LAPACK" = yes
--then AC_MSG_CHECKING([whether the vecLib framework is available])
--     SAVELIBS=$LIBS LIBS="-framework vecLib $LIBS"
--     AC_LANG(C)
--     AC_LINK_IFELSE(
--	 [AC_LANG_PROGRAM(,[sgemv_();dgetrf_();])],
--	 [
--	     AC_MSG_RESULT(yes)
--	     ],
--	 [
--	     AC_MSG_RESULT(no)
--	     LIBS=$SAVELIBS
--	     FORTRANUSED=yes
--	     if test $BUILD_lapack = no
--	     then AC_LANG(Fortran)
--	     	  if test "$FC" = ""
--		  then AC_MSG_ERROR(no fortran compiler found)
--		  else AC_MSG_NOTICE(using fortran compiler $FC)
--		  fi
--		  AC_SEARCH_LIBS(sgemv,blas f77blas,,BUILD_lapack=yes)
--		  AC_SEARCH_LIBS(dgetrf,lapack,,BUILD_lapack=yes)
--	     fi
--	 ])
--fi
--test $BUILD_lapack = yes && BUILTLIBS="-llapack -lblas $BUILTLIBS"
--
--if test $BUILD_lapack = yes
--then # test whether the fortran compiler can handle lapack, which, starting with
--     # version 3.2, requires fortran 90, not fortran 77
--    AC_LANG(Fortran)
--    AC_MSG_CHECKING([whether the fortran compiler is modern enough for lapack])
--    AC_COMPILE_IFELSE([instrinsic maxloc],
--	AC_MSG_ERROR(the fortran compiler ($FC) does not support the Fortran 90 language required for compiling lapack),
--	AC_MSG_RESULT(yes))
--fi
-+BUILTLIBS="$(${PKG_CONFIG} --libs lapack) $BUILTLIBS"
- 
- if test $BUILD_memtailor = yes
- then BUILTLIBS="-lmemtailor $BUILTLIBS"

diff --git a/sci-mathematics/Macaulay2/files/9999-paths-of-external-programs.patch b/sci-mathematics/Macaulay2/files/9999-paths-of-external-programs.patch
deleted file mode 100644
index 4c090deec..000000000
--- a/sci-mathematics/Macaulay2/files/9999-paths-of-external-programs.patch
+++ /dev/null
@@ -1,73 +0,0 @@
-diff -U 3 -dHrN M2source/Macaulay2/packages/FourTiTwo.m2 M2source.patch/Macaulay2/packages/FourTiTwo.m2
---- M2source/Macaulay2/packages/FourTiTwo.m2	2011-09-22 14:36:51.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/FourTiTwo.m2	2011-09-24 21:24:12.000000000 +0100
-@@ -47,7 +47,7 @@
- 
- path'4ti2 = (options FourTiTwo).Configuration#"path"
- -- NOTE: the absolute path should be put into the .init file for 4ti2 inside the .Macaulay2 directory.
--if path'4ti2 == "" then path'4ti2 = prefixDirectory | currentLayout#"programs"
-+if path'4ti2 == "" then path'4ti2 = "/usr/bin/"
- 
- getFilename = () -> (
-      filename := temporaryFileName();
-diff -U 3 -dHrN M2source/Macaulay2/packages/gfanInterface.m2 M2source.patch/Macaulay2/packages/gfanInterface.m2
---- M2source/Macaulay2/packages/gfanInterface.m2	2011-05-14 12:00:59.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/gfanInterface.m2	2011-09-24 21:24:12.000000000 +0100
-@@ -25,7 +25,7 @@
-      }
- 
- gfan'path = gfanInterface#Options#Configuration#"path"
--if gfan'path == "" then gfan'path = prefixDirectory | currentLayout#"programs"
-+if gfan'path == "" then gfan'path = "/usr/bin/"
- if instance(gfan'path, String) then gfan'path = {gfan'path}
- if not instance(gfan'path,List) then error "expected configuration option gfan'path to be a list of strings or a string"
- gfan'path = join(
-diff -U 3 -dHrN M2source/Macaulay2/packages/NautyGraphs.m2 M2source.patch/Macaulay2/packages/NautyGraphs.m2
---- M2source/Macaulay2/packages/NautyGraphs.m2	2011-08-26 11:05:30.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/NautyGraphs.m2	2011-09-24 21:25:53.000000000 +0100
-@@ -32,7 +32,7 @@
- -- Check the ~/.Macaulay2/init-NautyGraphs.m2 file for the absolute path.
- -- If it's not there, then use the M2-Programs directory.
- nauty'path = (options NautyGraphs).Configuration#"path";
--if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs";
-+if nauty'path == "" then nauty'path = "/usr/bin/";
- 
- -------------------
- -- Exports
-diff -U 3 -dHrN M2source/Macaulay2/packages/Nauty.m2 M2source.patch/Macaulay2/packages/Nauty.m2
---- M2source/Macaulay2/packages/Nauty.m2	2011-08-26 11:05:30.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/Nauty.m2	2011-09-24 21:24:12.000000000 +0100
-@@ -48,7 +48,8 @@
- -- Check the ~/.Macaulay2/init-Nauty.m2 file for the absolute path.
- -- If it's not there, then use the M2-Programs directory.
- nauty'path = (options Nauty).Configuration#"path";
--if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs";
-+if nauty'path == "" then nauty'path = "/usr/bin/";
-+
- 
- -------------------
- -- Exports
-diff -U 3 -dHrN M2source/Macaulay2/packages/Normaliz.m2 M2source.patch/Macaulay2/packages/Normaliz.m2
---- M2source/Macaulay2/packages/Normaliz.m2	2011-05-25 16:47:50.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/Normaliz.m2	2011-09-24 21:24:12.000000000 +0100
-@@ -166,7 +166,7 @@
-         nmzExec="normaliz";
-     );
- --    return nmzExec;
--    return prefixDirectory | currentLayout#"programs" | nmzExec;
-+    return "/usr/bin/" | nmzExec;
- );
- 
- 
-diff -U 3 -dHrN M2source/Macaulay2/packages/StatePolytope.m2 M2source.patch/Macaulay2/packages/StatePolytope.m2
---- M2source/Macaulay2/packages/StatePolytope.m2	2010-09-10 16:47:20.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/StatePolytope.m2	2011-09-24 21:24:12.000000000 +0100
-@@ -31,7 +31,7 @@
- 
- 
- gfanCommand = (options StatePolytope)#Configuration#"gfan command"
--if gfanCommand === "gfan" then gfanCommand = prefixDirectory | currentLayout#"programs" | gfanCommand
-+if gfanCommand === "gfan" then gfanCommand = "/usr/bin/" | gfanCommand
- gfanCommand = "!" | gfanCommand
- 
- --The next two functions print out the ring and the ideal in the format required by gfan

diff --git a/sci-mathematics/Macaulay2/files/paths-of-dependencies.patch b/sci-mathematics/Macaulay2/files/paths-of-dependencies.patch
deleted file mode 100644
index f8117a5fa..000000000
--- a/sci-mathematics/Macaulay2/files/paths-of-dependencies.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-diff -rupN 1.3.1/Macaulay2/packages/FourTiTwo.m2 1.3.1-pathspatched/Macaulay2/packages/FourTiTwo.m2
---- 1.3.1/Macaulay2/packages/FourTiTwo.m2	2009-11-12 18:40:50.000000000 +0100
-+++ 1.3.1-pathspatched/Macaulay2/packages/FourTiTwo.m2	2009-11-16 11:41:01.000000000 +0100
-@@ -47,7 +47,7 @@ export {
- 
- path'4ti2 = (options FourTiTwo).Configuration#"path"
- -- NOTE: the absolute path should be put into the .init file for 4ti2 inside the .Macaulay2 directory.
--if path'4ti2 == "" then path'4ti2 = prefixDirectory | currentLayout#"programs"
-+if path'4ti2 == "" then path'4ti2 = "/usr/bin/"
- 
- getFilename = () -> (
-      filename := temporaryFileName();
-diff -rupN 1.3.1/Macaulay2/packages/gfanInterface.m2 1.3.1-pathspatched/Macaulay2/packages/gfanInterface.m2
---- 1.3.1/Macaulay2/packages/gfanInterface.m2	2009-11-12 18:40:50.000000000 +0100
-+++ 1.3.1-pathspatched/Macaulay2/packages/gfanInterface.m2	2009-11-16 11:41:17.000000000 +0100
-@@ -26,7 +26,7 @@ export {
-      }
- 
- gfan'path = gfanInterface#Options#Configuration#"path"
--if gfan'path == "" then gfan'path = prefixDirectory | currentLayout#"programs"
-+if gfan'path == "" then gfan'path = "/usr/bin/"
- 
- fig2dev'path = gfanInterface#Options#Configuration#"fig2devpath"
- 
-diff -rupN 1.3.1/Macaulay2/packages/Normaliz.m2 1.3.1-pathspatched/Macaulay2/packages/Normaliz.m2
---- 1.3.1/Macaulay2/packages/Normaliz.m2	2009-11-12 18:40:50.000000000 +0100
-+++ 1.3.1-pathspatched/Macaulay2/packages/Normaliz.m2	2009-11-16 11:42:01.000000000 +0100
-@@ -30,7 +30,7 @@ export{setNmzExecPath, getNmzExecPath,
- 
- 
- -- initialising some values
--nmzExecPath=prefixDirectory|currentLayout#"programs";
-+nmzExecPath="/usr/bin/";
- nmzDataPath="";
- nmzFilename="";
- nmzUserCalled=true;  -- wether the user calls a method
-diff -rupN 1.3.1/Macaulay2/packages/StatePolytope.m2 1.3.1-pathspatched/Macaulay2/packages/StatePolytope.m2
---- 1.3.1/Macaulay2/packages/StatePolytope.m2	2009-11-12 18:40:50.000000000 +0100
-+++ 1.3.1-pathspatched/Macaulay2/packages/StatePolytope.m2	2009-11-16 11:41:13.000000000 +0100
-@@ -31,7 +31,7 @@ export { 
- 
- 
- gfanCommand = (options StatePolytope)#Configuration#"gfan command"
--if gfanCommand === "gfan" then gfanCommand = prefixDirectory | currentLayout#"programs" | gfanCommand
-+if gfanCommand === "gfan" then gfanCommand = "/usr/bin/" | gfanCommand
- gfanCommand = "!" | gfanCommand
- 
- --The next two functions print out the ring and the ideal in the format required by gfan

diff --git a/sci-mathematics/Macaulay2/metadata.xml b/sci-mathematics/Macaulay2/metadata.xml
deleted file mode 100644
index 703c18dee..000000000
--- a/sci-mathematics/Macaulay2/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>tom111@gmx.de</email>
-		<name>Thomas Kahle</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-mathematics@gentoo.org</email>
-		<name>Gentoo Mathematics Project</name>
-	</maintainer>
-	<use>
-		<flag name="optimization">Disable to build with -O0 for debugging.</flag>
-	</use>
-</pkgmetadata>


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2011-09-25  7:27 Thomas Kahle
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