From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1Quw0f-0002So-AG for garchives@archives.gentoo.org; Sun, 21 Aug 2011 00:35:29 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id B603721C0ED; Sun, 21 Aug 2011 00:35:21 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 6F22021C0ED for ; Sun, 21 Aug 2011 00:35:21 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E3DB71B402D for ; Sun, 21 Aug 2011 00:35:20 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 4E69780040 for ; Sun, 21 Aug 2011 00:35:20 +0000 (UTC) From: "Andrey Kislyuk" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrey Kislyuk" Message-ID: <88b992c67dc27d3173acc480c17996db61a80fad.weaver@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: dev-perl/Bio-SamTools/ X-VCS-Repository: proj/sci X-VCS-Files: dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild dev-perl/Bio-SamTools/ChangeLog dev-perl/Bio-SamTools/metadata.xml X-VCS-Directories: dev-perl/Bio-SamTools/ X-VCS-Committer: weaver X-VCS-Committer-Name: Andrey Kislyuk X-VCS-Revision: 88b992c67dc27d3173acc480c17996db61a80fad Date: Sun, 21 Aug 2011 00:35:20 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: 27f70326937beee7ae9fcd26566dfadd commit: 88b992c67dc27d3173acc480c17996db61a80fad Author: Andrey Kislyuk gentoo org> AuthorDate: Sun Aug 21 00:35:02 2011 +0000 Commit: Andrey Kislyuk gentoo org> CommitDate: Sun Aug 21 00:35:02 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3D88b992c6 In main tree --- dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild | 30 ------------------= ------ dev-perl/Bio-SamTools/ChangeLog | 10 -------- dev-perl/Bio-SamTools/metadata.xml | 5 ---- 3 files changed, 0 insertions(+), 45 deletions(-) diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild b/dev-perl/Bi= o-SamTools/Bio-SamTools-1.29.ebuild deleted file mode 100644 index 1b985ff..0000000 --- a/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild +++ /dev/null @@ -1,30 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# This ebuild generated by g-cpan 0.16.4 - -EAPI=3D"2" - -MODULE_AUTHOR=3D"LDS" - -inherit perl-module - -DESCRIPTION=3D"Bio::DB::Sam -- Read SAM/BAM database files" - -LICENSE=3D"|| ( Artistic GPL-1 GPL-2 GPL-3 )" -SLOT=3D"0" -KEYWORDS=3D"~amd64 ~x86" -IUSE=3D"" - -DEPEND=3D">=3Dsci-biology/bioperl-1.6.901 - virtual/perl-Module-Build - dev-lang/perl - >=3Dsci-biology/samtools-0.1.16" - -RDEPEND=3D"${DEPEND}" - -src_prepare(){ - sed -i s'#HeaderFile =3D "bam.h#HeaderFile =3D "bam/bam.h#' "${WORKDIR}= "/"${P}"/Build.PL || die "Failed to fix bam.h to bam/bam.h in Build.PL" - sed -i s'#include "bam.h#include "bam/bam.h#' "${WORKDIR}"/"${P}"/lib/B= io/DB/Sam.xs || die "Failed to fix bam.h to bam/bam.h in lib/Bio/DB/Sam.x= s" - sed -i s'#include "khash.h#include "bam/khash.h#' "${WORKDIR}"/"${P}"/l= ib/Bio/DB/Sam.xs || die "Failed to fix khash.h to bam/khash.h in lib/Bio/= DB/Sam.xs" - sed -i s'#include "faidx.h#include "bam/faidx.h#' "${WORKDIR}"/"${P}"/l= ib/Bio/DB/Sam.xs || die "Failed to fix faidx.h to bam/faidx.h in lib/Bio/= DB/Sam.xs" -} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/Chan= geLog deleted file mode 100644 index f54409a..0000000 --- a/dev-perl/Bio-SamTools/ChangeLog +++ /dev/null @@ -1,10 +0,0 @@ -# ChangeLog for dev-perl/Bio-SamTools -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*Bio-SamTools-1.29 (30 Jul 2011) - - 30 Jul 2011; Martin Mokrejs - +Bio-SamTools-1.29.ebuild, +metadata.xml: - dev-perl/Bio-SamTools: new package required by sci-biology/gbrowse - diff --git a/dev-perl/Bio-SamTools/metadata.xml b/dev-perl/Bio-SamTools/m= etadata.xml deleted file mode 100644 index d464821..0000000 --- a/dev-perl/Bio-SamTools/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ - - - - sci-biology -