[gentoo-commits] proj/sci:master commit in: dev-perl/Bio-SamTools/

[gentoo-commits] proj/sci:master commit in: dev-perl/Bio-SamTools/

[Andrey Kislyuk]

commit:     88b992c67dc27d3173acc480c17996db61a80fad
Author:     Andrey Kislyuk <weaver <AT> gentoo <DOT> org>
AuthorDate: Sun Aug 21 00:35:02 2011 +0000
Commit:     Andrey Kislyuk <weaver <AT> gentoo <DOT> org>
CommitDate: Sun Aug 21 00:35:02 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=88b992c6

In main tree

---
 dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild |   30 ------------------------
 dev-perl/Bio-SamTools/ChangeLog                |   10 --------
 dev-perl/Bio-SamTools/metadata.xml             |    5 ----
 3 files changed, 0 insertions(+), 45 deletions(-)

diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild
deleted file mode 100644
index 1b985ff..0000000
--- a/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# This ebuild generated by g-cpan 0.16.4
-
-EAPI="2"
-
-MODULE_AUTHOR="LDS"
-
-inherit perl-module
-
-DESCRIPTION="Bio::DB::Sam -- Read SAM/BAM database files"
-
-LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=">=sci-biology/bioperl-1.6.901
-	virtual/perl-Module-Build
-	dev-lang/perl
-	>=sci-biology/samtools-0.1.16"
-
-RDEPEND="${DEPEND}"
-
-src_prepare(){
-	sed -i s'#HeaderFile = "bam.h#HeaderFile = "bam/bam.h#' "${WORKDIR}"/"${P}"/Build.PL || die "Failed to fix bam.h to bam/bam.h in Build.PL"
-	sed -i s'#include "bam.h#include "bam/bam.h#' "${WORKDIR}"/"${P}"/lib/Bio/DB/Sam.xs || die "Failed to fix bam.h to bam/bam.h in lib/Bio/DB/Sam.xs"
-	sed -i s'#include "khash.h#include "bam/khash.h#' "${WORKDIR}"/"${P}"/lib/Bio/DB/Sam.xs || die "Failed to fix khash.h to bam/khash.h in lib/Bio/DB/Sam.xs"
-	sed -i s'#include "faidx.h#include "bam/faidx.h#' "${WORKDIR}"/"${P}"/lib/Bio/DB/Sam.xs || die "Failed to fix faidx.h to bam/faidx.h in lib/Bio/DB/Sam.xs"
-}

diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog
deleted file mode 100644
index f54409a..0000000
--- a/dev-perl/Bio-SamTools/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for dev-perl/Bio-SamTools
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*Bio-SamTools-1.29 (30 Jul 2011)
-
-  30 Jul 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
-  +Bio-SamTools-1.29.ebuild, +metadata.xml:
-  dev-perl/Bio-SamTools: new package required by sci-biology/gbrowse
-

diff --git a/dev-perl/Bio-SamTools/metadata.xml b/dev-perl/Bio-SamTools/metadata.xml
deleted file mode 100644
index d464821..0000000
--- a/dev-perl/Bio-SamTools/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci-biology</herd>
-</pkgmetadata>