From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1RaQtR-0008Jy-Jk for garchives@archives.gentoo.org; Tue, 13 Dec 2011 11:51:33 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E58A721C08B; Tue, 13 Dec 2011 11:51:25 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 9E3EF21C08B for ; Tue, 13 Dec 2011 11:51:25 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id D11201B4021 for ; Tue, 13 Dec 2011 11:51:24 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 204A98004A for ; Tue, 13 Dec 2011 11:51:24 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <78b98026b04382485abbf4722874ae13c267d3ed.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/genseed/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/genseed/ChangeLog sci-biology/genseed/genseed-1.0.22.ebuild sci-biology/genseed/metadata.xml X-VCS-Directories: sci-biology/genseed/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 78b98026b04382485abbf4722874ae13c267d3ed Date: Tue, 13 Dec 2011 11:51:24 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: 9793e446-3aa9-4832-9e67-040215f9e99a X-Archives-Hash: b533711301a1a0a508dd5d9f3f002c63 commit: 78b98026b04382485abbf4722874ae13c267d3ed Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Tue Dec 13 11:50:50 2011 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue Dec 13 11:50:50 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3D78b98026 A seed-driven progressive assembly program (Portage version: 2.1.10.38/git/Linux i686, unsigned Manifest commit) --- sci-biology/genseed/ChangeLog | 10 ++++++++++ sci-biology/genseed/genseed-1.0.22.ebuild | 24 +++++++++++++++++++++++= + sci-biology/genseed/metadata.xml | 9 +++++++++ 3 files changed, 43 insertions(+), 0 deletions(-) diff --git a/sci-biology/genseed/ChangeLog b/sci-biology/genseed/ChangeLo= g new file mode 100644 index 0000000..7107e74 --- /dev/null +++ b/sci-biology/genseed/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/genseed +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*genseed-1.0.22 (13 Dec 2011) + + 13 Dec 2011; Martin Mokrejs + +genseed-1.0.22.ebuild, +metadata.xml: + A seed-driven progressive assembly program genseed-1.0.22.ebuild + diff --git a/sci-biology/genseed/genseed-1.0.22.ebuild b/sci-biology/gens= eed/genseed-1.0.22.ebuild new file mode 100644 index 0000000..f52cc86 --- /dev/null +++ b/sci-biology/genseed/genseed-1.0.22.ebuild @@ -0,0 +1,24 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +DESCRIPTION=3D"Seed-driven progressive assembly program using legacy NCB= I blast, CAP3, and optionally cross_match" +HOMEPAGE=3D"http://www.coccidia.icb.usp.br/genseed/" +SRC_URI=3D"http://www.coccidia.icb.usp.br/genseed/download/${P}.tar.gz" + +LICENSE=3D"GPL-3" +SLOT=3D"0" +KEYWORDS=3D"~x86 ~amd64" +IUSE=3D"" + +# FIXME: I am not sure whether we want to introduce yet another USE vari= able "phrap" +# This tools can optionally use cross_match from sci-biology/phra= p but it will +# be installed only by users having the licence +DEPEND=3D"sci-biology/cap3-bin + dev-lang/perl + sci-biology/ncbi-tools" +RDEPEND=3D"" + +src_install() { + dobin genseed.pl +} diff --git a/sci-biology/genseed/metadata.xml b/sci-biology/genseed/metad= ata.xml new file mode 100644 index 0000000..07b5255 --- /dev/null +++ b/sci-biology/genseed/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +