[gentoo-commits] proj/sci:master commit in: sci-biology/genseed/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     78b98026b04382485abbf4722874ae13c267d3ed
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Dec 13 11:50:50 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Dec 13 11:50:50 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=78b98026

A seed-driven progressive assembly program

(Portage version: 2.1.10.38/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/genseed/ChangeLog             |   10 ++++++++++
 sci-biology/genseed/genseed-1.0.22.ebuild |   24 ++++++++++++++++++++++++
 sci-biology/genseed/metadata.xml          |    9 +++++++++
 3 files changed, 43 insertions(+), 0 deletions(-)

diff --git a/sci-biology/genseed/ChangeLog b/sci-biology/genseed/ChangeLog
new file mode 100644
index 0000000..7107e74
--- /dev/null
+++ b/sci-biology/genseed/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/genseed
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*genseed-1.0.22 (13 Dec 2011)
+
+  13 Dec 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +genseed-1.0.22.ebuild, +metadata.xml:
+  A seed-driven progressive assembly program genseed-1.0.22.ebuild
+

diff --git a/sci-biology/genseed/genseed-1.0.22.ebuild b/sci-biology/genseed/genseed-1.0.22.ebuild
new file mode 100644
index 0000000..f52cc86
--- /dev/null
+++ b/sci-biology/genseed/genseed-1.0.22.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+DESCRIPTION="Seed-driven progressive assembly program using legacy NCBI blast, CAP3, and optionally cross_match"
+HOMEPAGE="http://www.coccidia.icb.usp.br/genseed/"
+SRC_URI="http://www.coccidia.icb.usp.br/genseed/download/${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+# FIXME: I am not sure whether we want to introduce yet another USE variable "phrap"
+#        This tools can optionally use cross_match from sci-biology/phrap but it will
+#        be installed only by users having the licence
+DEPEND="sci-biology/cap3-bin
+		dev-lang/perl
+		sci-biology/ncbi-tools"
+RDEPEND=""
+
+src_install() {
+	dobin genseed.pl
+}

diff --git a/sci-biology/genseed/metadata.xml b/sci-biology/genseed/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/genseed/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>