* [gentoo-commits] proj/sci:master commit in: sci-biology/argo/
@ 2011-06-24 17:09 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2011-06-24 17:09 UTC (permalink / raw
To: gentoo-commits
commit: e411dd9812700a857e8bed9e3a1e66b754344f67
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 24 12:46:58 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 24 12:46:58 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e411dd98
Sort inherit and/or USE
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-biology/argo/argo-1.0.24.ebuild | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
diff --git a/sci-biology/argo/argo-1.0.24.ebuild b/sci-biology/argo/argo-1.0.24.ebuild
index 30fba87..30b7c1a 100644
--- a/sci-biology/argo/argo-1.0.24.ebuild
+++ b/sci-biology/argo/argo-1.0.24.ebuild
@@ -4,7 +4,7 @@
EAPI=3
-inherit toolchain-funcs java-utils-2 java-pkg-2 java-ant-2
+inherit java-ant-2 java-pkg-2 java-utils-2 toolchain-funcs
DESCRIPTION="The Argo Genome Browser is a production tool for
visualizing and manually annotating whole genomes
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/argo/
@ 2011-06-24 17:09 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2011-06-24 17:09 UTC (permalink / raw
To: gentoo-commits
commit: 74c3353af93e7e38e43f4761dd26ed2a4f17e81e
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 24 13:06:54 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 24 13:06:54 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=74c3353a
Sort inherit and/or USE
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-biology/argo/argo-1.0.24.ebuild | 9 ++++-----
1 files changed, 4 insertions(+), 5 deletions(-)
diff --git a/sci-biology/argo/argo-1.0.24.ebuild b/sci-biology/argo/argo-1.0.24.ebuild
index 4fc3592..0559798 100644
--- a/sci-biology/argo/argo-1.0.24.ebuild
+++ b/sci-biology/argo/argo-1.0.24.ebuild
@@ -6,9 +6,7 @@ EAPI=3
inherit java-pkg-2 java-ant-2 java-utils-2 toolchain-funcs
-DESCRIPTION="The Argo Genome Browser is a production tool for
- visualizing and manually annotating whole genomes
- stored in .gff3 files"
+DESCRIPTION="Production tool for visualizing and manually annotating whole genomes"
HOMEPAGE="http://www.broadinstitute.org/annotation/argo/"
SRC_URI="http://www.broadinstitute.org/annotation/argo/src/workspace-2008-03-11.tgz"
@@ -18,8 +16,9 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
RDEPEND=">=virtual/jre-1.5"
-DEPEND=">=virtual/jdk-1.5
- dev-java/ant-core"
+DEPEND="
+ >=virtual/jdk-1.5
+ dev-java/ant-core"
S="${WORKDIR}"/workspace-2008-03-11
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/argo/
@ 2011-06-24 17:09 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2011-06-24 17:09 UTC (permalink / raw
To: gentoo-commits
commit: 403a5611bbe3c27b6ec77deee804fc4a9968a9bb
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 24 13:05:15 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 24 13:05:15 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=403a5611
Sort inherit and/or USE
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-biology/argo/argo-1.0.24.ebuild | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
diff --git a/sci-biology/argo/argo-1.0.24.ebuild b/sci-biology/argo/argo-1.0.24.ebuild
index 30b7c1a..4fc3592 100644
--- a/sci-biology/argo/argo-1.0.24.ebuild
+++ b/sci-biology/argo/argo-1.0.24.ebuild
@@ -4,7 +4,7 @@
EAPI=3
-inherit java-ant-2 java-pkg-2 java-utils-2 toolchain-funcs
+inherit java-pkg-2 java-ant-2 java-utils-2 toolchain-funcs
DESCRIPTION="The Argo Genome Browser is a production tool for
visualizing and manually annotating whole genomes
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/argo/
@ 2015-03-13 12:32 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2015-03-13 12:32 UTC (permalink / raw
To: gentoo-commits
commit: d5a4c0852674c8eb0996e6410774ceddd6cd049b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 13 12:31:34 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 13 12:31:34 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d5a4c085
fix java depencies syntax
Package-Manager: portage-2.2.15
sci-biology/argo/ChangeLog | 6 ++++++
sci-biology/argo/argo-1.0.24.ebuild | 8 ++++----
2 files changed, 10 insertions(+), 4 deletions(-)
diff --git a/sci-biology/argo/ChangeLog b/sci-biology/argo/ChangeLog
new file mode 100644
index 0000000..950f76d
--- /dev/null
+++ b/sci-biology/argo/ChangeLog
@@ -0,0 +1,6 @@
+# ChangeLog for sci-biology/argo
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 13 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> argo-1.0.24.ebuild:
+ fix java depencies syntax
diff --git a/sci-biology/argo/argo-1.0.24.ebuild b/sci-biology/argo/argo-1.0.24.ebuild
index c58dfe4..00d3742 100644
--- a/sci-biology/argo/argo-1.0.24.ebuild
+++ b/sci-biology/argo/argo-1.0.24.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=5
inherit java-pkg-2 java-ant-2 java-utils-2 toolchain-funcs
@@ -15,10 +15,10 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
-RDEPEND=">=virtual/jre-1.5"
DEPEND="
- >=virtual/jdk-1.5
+ >=virtual/jdk-1.5:*
dev-java/ant-core"
+RDEPEND=">=virtual/jre-1.5:*"
S="${WORKDIR}"/workspace-2008-03-11
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/argo/
@ 2015-05-26 9:26 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2015-05-26 9:26 UTC (permalink / raw
To: gentoo-commits
commit: 8b99d3974bed076623b7413e49103cdd6c8ce0dc
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue May 26 09:26:11 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue May 26 09:26:11 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b99d397
sci-biology/argo: ebuild cleanup
Package-Manager: portage-2.2.18
sci-biology/argo/ChangeLog | 3 +++
sci-biology/argo/argo-1.0.24.ebuild | 9 ++++++++-
2 files changed, 11 insertions(+), 1 deletion(-)
diff --git a/sci-biology/argo/ChangeLog b/sci-biology/argo/ChangeLog
index 950f76d..72a3d3c 100644
--- a/sci-biology/argo/ChangeLog
+++ b/sci-biology/argo/ChangeLog
@@ -2,5 +2,8 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 26 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> argo-1.0.24.ebuild:
+ sci-biology/argo: ebuild cleanup
+
13 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> argo-1.0.24.ebuild:
fix java depencies syntax
diff --git a/sci-biology/argo/argo-1.0.24.ebuild b/sci-biology/argo/argo-1.0.24.ebuild
index 00d3742..6e522b6 100644
--- a/sci-biology/argo/argo-1.0.24.ebuild
+++ b/sci-biology/argo/argo-1.0.24.ebuild
@@ -7,8 +7,12 @@ EAPI=5
inherit java-pkg-2 java-ant-2 java-utils-2 toolchain-funcs
DESCRIPTION="Production tool for visualizing and manually annotating whole genomes"
-HOMEPAGE="http://www.broadinstitute.org/annotation/argo/"
+HOMEPAGE="http://www.broadinstitute.org/annotation/argo2
+ http://www.broadinstitute.org/annotation/argo"
SRC_URI="http://www.broadinstitute.org/annotation/argo/src/workspace-2008-03-11.tgz"
+#
+# cat workspace-2008-03-11/annotation/argo/version.txt
+# Gebo-1.0.17-build-1313
LICENSE="LGPL-3"
SLOT="0"
@@ -16,6 +20,7 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND="
+ !sci-biology/argo-bin
>=virtual/jdk-1.5:*
dev-java/ant-core"
RDEPEND=">=virtual/jre-1.5:*"
@@ -29,5 +34,7 @@ src_compile(){
src_install() {
java-pkg_dojar annotation/dist/argo/argo.jar
+ #java-pkg_dolauncher --jar argo.jar
java-pkg_dojar annotation/dist/argo/argo-applet-unproguarded.jar
+ #java-pkg_dolauncher --jar argo-applet-unproguarded.jar
}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/argo/
@ 2020-12-25 18:45 Horea Christian
0 siblings, 0 replies; 6+ messages in thread
From: Horea Christian @ 2020-12-25 18:45 UTC (permalink / raw
To: gentoo-commits
commit: 97d98b4e81d694cf5a737f2087d7b448fc428afd
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Dec 25 18:45:04 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Dec 25 18:45:04 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=97d98b4e
sci-biology/argo: removed package with missing source files
Archive no longer available:
http://www.broadinstitute.org/annotation/argo/src/workspace-2008-03-11.tgz
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/argo/argo-1.0.24.ebuild | 39 -------------------------------------
sci-biology/argo/metadata.xml | 12 ------------
2 files changed, 51 deletions(-)
diff --git a/sci-biology/argo/argo-1.0.24.ebuild b/sci-biology/argo/argo-1.0.24.ebuild
deleted file mode 100644
index 218f74705..000000000
--- a/sci-biology/argo/argo-1.0.24.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit java-pkg-2 java-ant-2 java-utils-2 toolchain-funcs
-
-DESCRIPTION="Production tool for visualizing and manually annotating whole genomes"
-HOMEPAGE="http://www.broadinstitute.org/annotation/argo2
- http://www.broadinstitute.org/annotation/argo"
-SRC_URI="http://www.broadinstitute.org/annotation/argo/src/workspace-2008-03-11.tgz"
-#
-# cat workspace-2008-03-11/annotation/argo/version.txt
-# Gebo-1.0.17-build-1313
-
-LICENSE="LGPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="
- !sci-biology/argo-bin
- >=virtual/jdk-1.5:*
- dev-java/ant-core"
-RDEPEND=">=virtual/jre-1.5:*"
-
-S="${WORKDIR}"/workspace-2008-03-11
-
-src_compile(){
- cd "${S}"/annotation/argo
- ant build || die
-}
-
-src_install() {
- java-pkg_dojar annotation/dist/argo/argo.jar
- #java-pkg_dolauncher --jar argo.jar
- java-pkg_dojar annotation/dist/argo/argo-applet-unproguarded.jar
- #java-pkg_dolauncher --jar argo-applet-unproguarded.jar
-}
diff --git a/sci-biology/argo/metadata.xml b/sci-biology/argo/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/argo/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
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