From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1Pv9R3-0004tg-L1 for garchives@archives.gentoo.org; Thu, 03 Mar 2011 14:23:21 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E825FE0484; Thu, 3 Mar 2011 14:23:14 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id B141BE0484 for ; Thu, 3 Mar 2011 14:23:14 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher ADH-CAMELLIA256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id D7A181B42FA for ; Thu, 3 Mar 2011 14:23:13 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 4803C8006E for ; Thu, 3 Mar 2011 14:23:13 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <6a6c1157533733afb2a354e4886c2e5dabb3f107.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: / X-VCS-Repository: proj/sci X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 6a6c1157533733afb2a354e4886c2e5dabb3f107 Date: Thu, 3 Mar 2011 14:23:13 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: d8adf4a344bc467120d0cf45ef2d45db commit: 6a6c1157533733afb2a354e4886c2e5dabb3f107 Author: Justin Lecher gentoo org> AuthorDate: Thu Mar 3 14:23:06 2011 +0000 Commit: Justin Lecher gentoo org> CommitDate: Thu Mar 3 14:23:06 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3D6a6c1157 Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci * 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: [mpi] Add os-mpi for prefix support sci-biology/smalt-bin: an alternative to ssaha2 for even shorter reads sci-biology/bambus: added goBambus.pl script and perl/python dependenci= es [sci-libs/opencascade] Moved to main tree. sci-biology/ssaha2-bin: new package, the GRL license text extracted fro= m the saha2-manual.pdf seems kind of ... not like a real License text sci-biology/ssaha2: new package, the GRL license text extracted from th= e saha2-manual.pdf seems kind of ... not like a real License text Add epatch_user back for gromacs live ebuilds sci-biology/bambus/Manifest | 5 +- sci-biology/bambus/bambus-2.33.ebuild | 6 +- sci-biology/bambus/files/goBambus.pl | 244 +++++++++++++ sci-biology/smalt-bin/Manifest | 3 + sci-biology/{OBO-Edit =3D> smalt-bin}/metadata.xml | 0 sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild | 33 ++ sci-biology/ssaha2-bin/Manifest | 7 + sci-biology/{OBO-Edit =3D> ssaha2-bin}/metadata.xml | 0 sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild | 43 +++ sci-chemistry/gromacs/Manifest | 28 +- sci-chemistry/gromacs/gromacs-4.5.9999.ebuild | 5 +- sci-chemistry/gromacs/gromacs-9999.ebuild | 5 +- sci-libs/opencascade/ChangeLog | 68 ---- sci-libs/opencascade/Manifest | 19 - sci-libs/opencascade/files/env.ksh.template | 39 --- .../files/opencascade-6.3-fixed-DESTDIR.patch | 358 --------------= ------ .../files/opencascade-6.3-missing-mode.patch | 12 - sci-libs/opencascade/metadata.xml | 8 - sci-libs/opencascade/opencascade-6.3-r1.ebuild | 217 ------------ sci-libs/opencascade/opencascade-6.3-r2.ebuild | 219 ------------ sys-cluster/os-mpi/Manifest | 2 + sys-cluster/{nullmpi =3D> os-mpi}/metadata.xml | 0 sys-cluster/os-mpi/os-mpi-0.ebuild | 18 + virtual/mpi/Manifest | 12 +- virtual/mpi/mpi-2.0-r2.ebuild | 3 +- 25 files changed, 386 insertions(+), 968 deletions(-)