* [gentoo-commits] proj/sci:master commit in: dev-python/go-parser/
@ 2011-12-26 17:15 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2011-12-26 17:15 UTC (permalink / raw
To: gentoo-commits
commit: 62ad59a94dca8fbac07a9224ed470332fb1efdfa
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Dec 26 17:14:57 2011 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Dec 26 17:14:57 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=62ad59a9
dev-python/go-parser: a Gene Ontology OBO file format parser
(Portage version: 2.1.10.38/git/Linux i686, unsigned Manifest commit)
---
dev-python/go-parser/ChangeLog | 10 ++++++++++
dev-python/go-parser/go-parser-9999.ebuild | 24 ++++++++++++++++++++++++
dev-python/go-parser/metadata.xml | 9 +++++++++
3 files changed, 43 insertions(+), 0 deletions(-)
diff --git a/dev-python/go-parser/ChangeLog b/dev-python/go-parser/ChangeLog
new file mode 100644
index 0000000..e506b82
--- /dev/null
+++ b/dev-python/go-parser/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for dev-python/go-parser
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*go-parser-9999 (26 Dec 2011)
+
+ 26 Dec 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +go-parser-9999.ebuild, +metadata.xml:
+ Initial ebuild
+
diff --git a/dev-python/go-parser/go-parser-9999.ebuild b/dev-python/go-parser/go-parser-9999.ebuild
new file mode 100644
index 0000000..f070ba5
--- /dev/null
+++ b/dev-python/go-parser/go-parser-9999.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+
+inherit distutils eutils
+
+DESCRIPTION="Gene Ontology OBO flatfile parser"
+HOMEPAGE="http://hal.elte.hu/~nepusz/development/"
+SRC_URI="http://bazaar.launchpad.net/~ntamas/+junk/go-parser/tarball/7?start_revid=7 -> go-parser-r7.tgz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/~ntamas/+junk/go-parser
diff --git a/dev-python/go-parser/metadata.xml b/dev-python/go-parser/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/dev-python/go-parser/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/go-parser/
@ 2011-12-27 15:05 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2011-12-27 15:05 UTC (permalink / raw
To: gentoo-commits
commit: 56dd448dfcc4569b2b5356fd44a62e83e73ae7f2
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Dec 27 15:05:15 2011 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Dec 27 15:05:15 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=56dd448d
documented status of go-parser (as a very simple implementation) which should be dropped once its successor code get into biopython
(Portage version: 2.1.10.43/git/Linux i686, unsigned Manifest commit)
---
dev-python/go-parser/ChangeLog | 5 +++++
dev-python/go-parser/go-parser-9999.ebuild | 6 +++++-
2 files changed, 10 insertions(+), 1 deletions(-)
diff --git a/dev-python/go-parser/ChangeLog b/dev-python/go-parser/ChangeLog
index e506b82..4d2bb6f 100644
--- a/dev-python/go-parser/ChangeLog
+++ b/dev-python/go-parser/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 27 Dec 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ go-parser-9999.ebuild:
+ documented status of go-parser (as a very simple implementation) which should
+ be dropped once its successor code get into biopython
+
*go-parser-9999 (26 Dec 2011)
26 Dec 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/dev-python/go-parser/go-parser-9999.ebuild b/dev-python/go-parser/go-parser-9999.ebuild
index f070ba5..3f80cf4 100644
--- a/dev-python/go-parser/go-parser-9999.ebuild
+++ b/dev-python/go-parser/go-parser-9999.ebuild
@@ -9,13 +9,17 @@ SUPPORT_PYTHON_ABIS="1"
inherit distutils eutils
+# A much more robust code is at https://github.com/ntamas/biopython in Bio/GO subdir
+# When that gets incorporated into biopython the go-parser should be dropped altogether.
+
DESCRIPTION="Gene Ontology OBO flatfile parser"
HOMEPAGE="http://hal.elte.hu/~nepusz/development/"
SRC_URI="http://bazaar.launchpad.net/~ntamas/+junk/go-parser/tarball/7?start_revid=7 -> go-parser-r7.tgz"
LICENSE="MIT"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+#KEYWORDS="~amd64 ~x86"
+KEYWORDS=""
IUSE=""
DEPEND=""
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/go-parser/
@ 2013-06-13 16:42 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2013-06-13 16:42 UTC (permalink / raw
To: gentoo-commits
commit: 79fa30ff6c4ae70aeb166ea9ff8297423a0a8079
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Jun 13 15:57:57 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jun 13 15:57:57 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=79fa30ff
dev-python/go-parser: Bump to EAPI=5 and distutils-r1.eclass
Package-Manager: portage-2.2.0_alpha179
---
dev-python/go-parser/ChangeLog | 6 +++++-
dev-python/go-parser/go-parser-9999.ebuild | 13 ++++---------
dev-python/go-parser/metadata.xml | 10 +++++-----
3 files changed, 14 insertions(+), 15 deletions(-)
diff --git a/dev-python/go-parser/ChangeLog b/dev-python/go-parser/ChangeLog
index 4d2bb6f..fc457d6 100644
--- a/dev-python/go-parser/ChangeLog
+++ b/dev-python/go-parser/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for dev-python/go-parser
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 13 Jun 2013; Justin Lecher <jlec@gentoo.org> go-parser-9999.ebuild,
+ metadata.xml:
+ Bump to EAPI=5 and distutils-r1.eclass
+
27 Dec 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
go-parser-9999.ebuild:
documented status of go-parser (as a very simple implementation) which should
diff --git a/dev-python/go-parser/go-parser-9999.ebuild b/dev-python/go-parser/go-parser-9999.ebuild
index 3f80cf4..14ba4ec 100644
--- a/dev-python/go-parser/go-parser-9999.ebuild
+++ b/dev-python/go-parser/go-parser-9999.ebuild
@@ -1,13 +1,12 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=5
-PYTHON_DEPEND="2"
-SUPPORT_PYTHON_ABIS="1"
+PYTHON_COMPAT=( python{2_6,2_7} )
-inherit distutils eutils
+inherit distutils-r1
# A much more robust code is at https://github.com/ntamas/biopython in Bio/GO subdir
# When that gets incorporated into biopython the go-parser should be dropped altogether.
@@ -18,11 +17,7 @@ SRC_URI="http://bazaar.launchpad.net/~ntamas/+junk/go-parser/tarball/7?start_rev
LICENSE="MIT"
SLOT="0"
-#KEYWORDS="~amd64 ~x86"
KEYWORDS=""
IUSE=""
-DEPEND=""
-RDEPEND="${DEPEND}"
-
S="${WORKDIR}"/~ntamas/+junk/go-parser
diff --git a/dev-python/go-parser/metadata.xml b/dev-python/go-parser/metadata.xml
index 07b5255..2bc8930 100644
--- a/dev-python/go-parser/metadata.xml
+++ b/dev-python/go-parser/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-biology</herd>
- <maintainer>
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/go-parser/
@ 2015-09-21 14:04 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2015-09-21 14:04 UTC (permalink / raw
To: gentoo-commits
commit: 21a5fdc8fb02bd49b0436c8a567f3143348b9688
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 13:51:44 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 13:51:44 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=21a5fdc8
Drop obsolete package Sources unavailable
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
dev-python/go-parser/ChangeLog | 19 -------------------
dev-python/go-parser/go-parser-9999.ebuild | 23 -----------------------
dev-python/go-parser/metadata.xml | 9 ---------
3 files changed, 51 deletions(-)
diff --git a/dev-python/go-parser/ChangeLog b/dev-python/go-parser/ChangeLog
deleted file mode 100644
index 16f068a..0000000
--- a/dev-python/go-parser/ChangeLog
+++ /dev/null
@@ -1,19 +0,0 @@
-# ChangeLog for dev-python/go-parser
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Id$
-
- 13 Jun 2013; Justin Lecher <jlec@gentoo.org> go-parser-9999.ebuild,
- metadata.xml:
- Bump to EAPI=5 and distutils-r1.eclass
-
- 27 Dec 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
- go-parser-9999.ebuild:
- documented status of go-parser (as a very simple implementation) which should
- be dropped once its successor code get into biopython
-
-*go-parser-9999 (26 Dec 2011)
-
- 26 Dec 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
- +go-parser-9999.ebuild, +metadata.xml:
- Initial ebuild
-
diff --git a/dev-python/go-parser/go-parser-9999.ebuild b/dev-python/go-parser/go-parser-9999.ebuild
deleted file mode 100644
index b3f7b26..0000000
--- a/dev-python/go-parser/go-parser-9999.ebuild
+++ /dev/null
@@ -1,23 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-# A much more robust code is at https://github.com/ntamas/biopython in Bio/GO subdir
-# When that gets incorporated into biopython the go-parser should be dropped altogether.
-
-DESCRIPTION="Gene Ontology OBO flatfile parser"
-HOMEPAGE="http://hal.elte.hu/~nepusz/development/"
-SRC_URI="http://bazaar.launchpad.net/~ntamas/+junk/go-parser/tarball/7?start_revid=7 -> go-parser-r7.tgz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-S="${WORKDIR}"/~ntamas/+junk/go-parser
diff --git a/dev-python/go-parser/metadata.xml b/dev-python/go-parser/metadata.xml
deleted file mode 100644
index 2bc8930..0000000
--- a/dev-python/go-parser/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-biology</herd>
- <maintainer>
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
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