* [gentoo-commits] proj/sci:master commit in: sci-biology/mrsfast/
@ 2011-12-18 23:40 Andrey Kislyuk
0 siblings, 0 replies; 3+ messages in thread
From: Andrey Kislyuk @ 2011-12-18 23:40 UTC (permalink / raw
To: gentoo-commits
commit: 34b37657d5122774df1cd4048e487efb529fceca
Author: Andrey Kislyuk <kislyuk <AT> gmail <DOT> com>
AuthorDate: Sun Dec 18 23:40:37 2011 +0000
Commit: Andrey Kislyuk <weaver <AT> gentoo <DOT> org>
CommitDate: Sun Dec 18 23:40:37 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=34b37657
New package, ebuild written by me
---
sci-biology/mrsfast/metadata.xml | 9 ++++++++
sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild | 30 ++++++++++++++++++++++++++++
2 files changed, 39 insertions(+), 0 deletions(-)
diff --git a/sci-biology/mrsfast/metadata.xml b/sci-biology/mrsfast/metadata.xml
new file mode 100644
index 0000000..3302123
--- /dev/null
+++ b/sci-biology/mrsfast/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild b/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild
new file mode 100644
index 0000000..505aaeb
--- /dev/null
+++ b/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8-r1.ebuild,v 1.1 2010/02/11 16:47:31 weaver Exp $
+
+EAPI=4
+
+inherit base
+
+DESCRIPTION="Micro Read Fast Alignment Search Tool"
+HOMEPAGE="http://mrfast.sourceforge.net/"
+SRC_URI="mirror://sourceforge/mrfast/mrsfast/${PV}/${P}.zip"
+
+LICENSE="BSD"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64"
+
+DEPEND=""
+RDEPEND=""
+
+PATCHES=("${FILESDIR}"/${P}-*.patch)
+
+src_prepare() {
+# base_src_prepare
+ sed -i -e 's/CFLAGS =/CFLAGS +=/' -e 's/LDFLAGS =/LDFLAGS +=/' Makefile
+}
+
+src_install() {
+ dobin mrsfast
+}
^ permalink raw reply related [flat|nested] 3+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/mrsfast/
@ 2014-01-06 17:18 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2014-01-06 17:18 UTC (permalink / raw
To: gentoo-commits
commit: 4e0c2e6cf7939232a30f579b0b742f5055285733
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 6 16:21:05 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 6 16:21:05 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4e0c2e6c
sci-biology/mrsfast: Version BUmp; punt base.eclass
Package-Manager: portage-2.2.8
---
sci-biology/mrsfast/ChangeLog | 8 ++++++++
sci-biology/mrsfast/metadata.xml | 10 +++++-----
sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild | 30 ------------------------------
sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild | 29 +++++++++++++++++++++++++++++
4 files changed, 42 insertions(+), 35 deletions(-)
diff --git a/sci-biology/mrsfast/ChangeLog b/sci-biology/mrsfast/ChangeLog
new file mode 100644
index 0000000..18488f4
--- /dev/null
+++ b/sci-biology/mrsfast/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/mrsfast
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> -mrsfast-2.3.0.2.ebuild,
+ +mrsfast-2.6.0.4.ebuild, metadata.xml:
+ Version BUmp; punt base.eclass
+
diff --git a/sci-biology/mrsfast/metadata.xml b/sci-biology/mrsfast/metadata.xml
index 3302123..fc7c769 100644
--- a/sci-biology/mrsfast/metadata.xml
+++ b/sci-biology/mrsfast/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
</pkgmetadata>
diff --git a/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild b/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild
deleted file mode 100644
index 505aaeb..0000000
--- a/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8-r1.ebuild,v 1.1 2010/02/11 16:47:31 weaver Exp $
-
-EAPI=4
-
-inherit base
-
-DESCRIPTION="Micro Read Fast Alignment Search Tool"
-HOMEPAGE="http://mrfast.sourceforge.net/"
-SRC_URI="mirror://sourceforge/mrfast/mrsfast/${PV}/${P}.zip"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-DEPEND=""
-RDEPEND=""
-
-PATCHES=("${FILESDIR}"/${P}-*.patch)
-
-src_prepare() {
-# base_src_prepare
- sed -i -e 's/CFLAGS =/CFLAGS +=/' -e 's/LDFLAGS =/LDFLAGS +=/' Makefile
-}
-
-src_install() {
- dobin mrsfast
-}
diff --git a/sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild b/sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild
new file mode 100644
index 0000000..568d217
--- /dev/null
+++ b/sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8-r1.ebuild,v 1.1 2010/02/11 16:47:31 weaver Exp $
+
+EAPI=5
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="Micro Read Fast Alignment Search Tool"
+HOMEPAGE="http://mrsfast.sourceforge.net/Home"
+SRC_URI="mirror://sourceforge/mrsfast/${PV}/${P}.zip"
+
+LICENSE="BSD"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64"
+
+src_prepare() {
+ sed \
+ -e "s:gcc:$(tc-getCC) ${LDFLAGS}:g" \
+ -e '/^CFLAGS/d' \
+ -e '/^LDFLAGS/d' \
+ -i Makefile || die
+ tc-export CC
+}
+
+src_install() {
+ dobin ${PN}
+}
^ permalink raw reply related [flat|nested] 3+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/mrsfast/
@ 2022-01-25 13:15 Andrew Ammerlaan
0 siblings, 0 replies; 3+ messages in thread
From: Andrew Ammerlaan @ 2022-01-25 13:15 UTC (permalink / raw
To: gentoo-commits
commit: 961b53dced314b1a04547b5f7fc70740755aba15
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 13:14:50 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 13:14:50 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=961b53dc
sci-biology/mrsfast: drop dead package
does not compile, no upstream activity
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/mrsfast/metadata.xml | 11 -----------
sci-biology/mrsfast/mrsfast-3.4.2.ebuild | 28 ----------------------------
2 files changed, 39 deletions(-)
diff --git a/sci-biology/mrsfast/metadata.xml b/sci-biology/mrsfast/metadata.xml
deleted file mode 100644
index 309390097..000000000
--- a/sci-biology/mrsfast/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">mrsfast</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/mrsfast/mrsfast-3.4.2.ebuild b/sci-biology/mrsfast/mrsfast-3.4.2.ebuild
deleted file mode 100644
index 91f7d771c..000000000
--- a/sci-biology/mrsfast/mrsfast-3.4.2.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit toolchain-funcs
-
-DESCRIPTION="Micro Read Fast Alignment Search Tool"
-HOMEPAGE="https://sfu-compbio.github.io/mrsfast/"
-SRC_URI="https://github.com/sfu-compbio/mrsfast/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS=""
-
-src_prepare() {
- default
- sed \
- -e "s:gcc:$(tc-getCC) ${LDFLAGS}:g" \
- -e '/^CFLAGS/d' \
- -e '/^LDFLAGS/d' \
- -i Makefile || die
- tc-export CC
-}
-
-src_install() {
- dobin ${PN}
-}
^ permalink raw reply related [flat|nested] 3+ messages in thread
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