* [gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol: pymol-1.7.0.1.ebuild ChangeLog
@ 2014-01-26 8:12 Justin Lecher (jlec)
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2014-01-26 8:12 UTC (permalink / raw
To: gentoo-commits
jlec 14/01/26 08:12:09
Modified: ChangeLog
Added: pymol-1.7.0.1.ebuild
Log:
sci-chemistry/pymol: Version Bump
(Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path
1.107 sci-chemistry/pymol/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.107&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.107&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?r1=1.106&r2=1.107
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v
retrieving revision 1.106
retrieving revision 1.107
diff -u -r1.106 -r1.107
--- ChangeLog 26 Jan 2014 08:03:18 -0000 1.106
+++ ChangeLog 26 Jan 2014 08:12:09 -0000 1.107
@@ -1,6 +1,11 @@
# ChangeLog for sci-chemistry/pymol
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.106 2014/01/26 08:03:18 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.107 2014/01/26 08:12:09 jlec Exp $
+
+*pymol-1.7.0.1 (26 Jan 2014)
+
+ 26 Jan 2014; Justin Lecher <jlec@gentoo.org> +pymol-1.7.0.1.ebuild:
+ Version Bump
26 Jan 2014; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.3-r1.ebuild,
pymol-1.5.0.3-r2.ebuild, pymol-1.6.0_rc1.ebuild, pymol-1.6.0.0.ebuild,
1.1 sci-chemistry/pymol/pymol-1.7.0.1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?rev=1.1&content-type=text/plain
Index: pymol-1.7.0.1.ebuild
===================================================================
# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v 1.1 2014/01/26 08:12:09 jlec Exp $
EAPI=5
PYTHON_COMPAT=( python2_7 )
PYTHON_REQ_USE="tk"
inherit distutils-r1 fdo-mime versionator
DESCRIPTION="A Python-extensible molecular graphics system"
HOMEPAGE="http://www.pymol.org/"
SRC_URI="
http://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz
http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
"
# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2
LICENSE="PSF-2.2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
IUSE="apbs web"
DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pmw[${PYTHON_USEDEP}]
dev-python/pyopengl[${PYTHON_USEDEP}]
media-libs/freetype:2
media-libs/glew
media-libs/libpng
media-video/mpeg-tools
sys-libs/zlib
media-libs/freeglut
apbs? (
dev-libs/maloc
sci-chemistry/apbs
sci-chemistry/pdb2pqr
sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}]
)
web? ( !dev-python/webpy[${PYTHON_USEDEP}] )"
RDEPEND="${DEPEND}"
S="${WORKDIR}"/${P}/${PN}
python_prepare_all() {
sed \
-e "s:\"/usr:\"${EPREFIX}/usr:g" \
-e "/ext_comp_args/s:=\[.*\]$:= \[\]:g" \
-e "/import/s:argparse:argparseX:g" \
-i setup.py || die
rm ./modules/pmg_tk/startup/apbs_tools.py || die
sed \
-e "s:/opt/local:${EPREFIX}/usr:g" \
-e '/ext_comp_args/s:\[.*\]:[]:g' \
-i setup.py || die
distutils-r1_python_prepare_all
}
python_install() {
distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol"
}
python_install_all() {
distutils-r1_python_install_all
python_export python2_7 EPYTHON
# These environment variables should not go in the wrapper script, or else
# it will be impossible to use the PyMOL libraries from Python.
cat >> "${T}"/20pymol <<- EOF
PYMOL_PATH="$(python_get_sitedir)/${PN}"
PYMOL_DATA="${EPREFIX}/usr/share/pymol/data"
PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts"
EOF
doenvd "${T}"/20pymol
newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png
make_desktop_entry pymol PyMol ${PN} "Graphics;Education;Science;Chemistry" "MimeType=chemical/x-pdb;"
if ! use web; then
rm -rf "${D}/$(python_get_sitedir)/web" || die
fi
rm -f "${ED}"/usr/share/${PN}/LICENSE || die
}
pkg_postinst() {
fdo-mime_desktop_database_update
fdo-mime_mime_database_update
}
pkg_postrm() {
fdo-mime_desktop_database_update
fdo-mime_mime_database_update
}
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol: pymol-1.7.0.1.ebuild ChangeLog
@ 2014-07-10 9:29 JosA MarAa Alonso (nimiux)
0 siblings, 0 replies; 4+ messages in thread
From: JosA MarAa Alonso (nimiux) @ 2014-07-10 9:29 UTC (permalink / raw
To: gentoo-commits
nimiux 14/07/10 09:29:47
Modified: pymol-1.7.0.1.ebuild ChangeLog
Log:
Stable for amd64 wrt bug #507142
(Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key D628E536)
Revision Changes Path
1.3 sci-chemistry/pymol/pymol-1.7.0.1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?r1=1.2&r2=1.3
Index: pymol-1.7.0.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- pymol-1.7.0.1.ebuild 1 May 2014 12:18:46 -0000 1.2
+++ pymol-1.7.0.1.ebuild 10 Jul 2014 09:29:47 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v 1.2 2014/05/01 12:18:46 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v 1.3 2014/07/10 09:29:47 nimiux Exp $
EAPI=5
@@ -19,7 +19,7 @@
LICENSE="PSF-2.2"
SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
IUSE="apbs web"
DEPEND="
1.114 sci-chemistry/pymol/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.114&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.114&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?r1=1.113&r2=1.114
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v
retrieving revision 1.113
retrieving revision 1.114
diff -u -r1.113 -r1.114
--- ChangeLog 14 May 2014 14:02:17 -0000 1.113
+++ ChangeLog 10 Jul 2014 09:29:47 -0000 1.114
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/pymol
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.113 2014/05/14 14:02:17 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.114 2014/07/10 09:29:47 nimiux Exp $
+
+ 10 Jul 2014; Chema Alonso <nimiux@gentoo.org> pymol-1.7.0.1.ebuild:
+ Stable for amd64 wrt bug #507142
*pymol-1.7.1.3 (14 May 2014)
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol: pymol-1.7.0.1.ebuild ChangeLog
@ 2014-08-13 14:34 Andreas Schuerch (nativemad)
0 siblings, 0 replies; 4+ messages in thread
From: Andreas Schuerch (nativemad) @ 2014-08-13 14:34 UTC (permalink / raw
To: gentoo-commits
nativemad 14/08/13 14:34:38
Modified: pymol-1.7.0.1.ebuild ChangeLog
Log:
x86 stable, see bug 507142
(Portage version: 2.2.8-r1/cvs/Linux i686, signed Manifest commit with key C1DE54B2)
Revision Changes Path
1.4 sci-chemistry/pymol/pymol-1.7.0.1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?r1=1.3&r2=1.4
Index: pymol-1.7.0.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- pymol-1.7.0.1.ebuild 10 Jul 2014 09:29:47 -0000 1.3
+++ pymol-1.7.0.1.ebuild 13 Aug 2014 14:34:38 -0000 1.4
@@ -1,6 +1,6 @@
# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v 1.3 2014/07/10 09:29:47 nimiux Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v 1.4 2014/08/13 14:34:38 nativemad Exp $
EAPI=5
@@ -19,7 +19,7 @@
LICENSE="PSF-2.2"
SLOT="0"
-KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
IUSE="apbs web"
DEPEND="
1.116 sci-chemistry/pymol/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.116&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.116&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?r1=1.115&r2=1.116
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v
retrieving revision 1.115
retrieving revision 1.116
diff -u -r1.115 -r1.116
--- ChangeLog 11 Aug 2014 07:27:00 -0000 1.115
+++ ChangeLog 13 Aug 2014 14:34:38 -0000 1.116
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/pymol
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.115 2014/08/11 07:27:00 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.116 2014/08/13 14:34:38 nativemad Exp $
+
+ 13 Aug 2014; Andreas Schuerch <nativemad@gentoo.org> pymol-1.7.0.1.ebuild:
+ x86 stable, see bug 507142
*pymol-1.7.2.0 (11 Aug 2014)
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol: pymol-1.7.0.1.ebuild ChangeLog
@ 2015-05-26 14:05 Justin Lecher (jlec)
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2015-05-26 14:05 UTC (permalink / raw
To: gentoo-commits
jlec 15/05/26 14:05:52
Modified: pymol-1.7.0.1.ebuild ChangeLog
Log:
Move to virtual
(Portage version: 2.2.20/cvs/Linux x86_64, signed Manifest commit with key E9402A79B03529A2!)
Revision Changes Path
1.6 sci-chemistry/pymol/pymol-1.7.0.1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild?r1=1.5&r2=1.6
Index: pymol-1.7.0.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- pymol-1.7.0.1.ebuild 16 Mar 2015 07:13:30 -0000 1.5
+++ pymol-1.7.0.1.ebuild 26 May 2015 14:05:52 -0000 1.6
@@ -1,6 +1,6 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v 1.5 2015/03/16 07:13:30 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.7.0.1.ebuild,v 1.6 2015/05/26 14:05:52 jlec Exp $
EAPI=5
@@ -24,7 +24,6 @@
DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pmw:py2[${PYTHON_USEDEP}]
dev-python/pyopengl[${PYTHON_USEDEP}]
media-libs/freeglut
media-libs/freetype:2
@@ -32,6 +31,7 @@
media-libs/libpng:0=
media-video/mpeg-tools
sys-libs/zlib
+ virtual/pmw[${PYTHON_USEDEP}]
apbs? (
sci-chemistry/apbs
sci-chemistry/pdb2pqr
@@ -79,7 +79,9 @@
doenvd "${T}"/20pymol
newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png
- make_desktop_entry pymol PyMol ${PN} "Graphics;Education;Science;Chemistry" "MimeType=chemical/x-pdb;"
+ make_desktop_entry ${PN} PyMol ${PN} \
+ "Graphics;Education;Science;Chemistry;" \
+ "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;"
if ! use web; then
rm -rf "${D}/$(python_get_sitedir)/web" || die
1.130 sci-chemistry/pymol/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.130&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.130&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?r1=1.129&r2=1.130
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v
retrieving revision 1.129
retrieving revision 1.130
diff -u -r1.129 -r1.130
--- ChangeLog 5 May 2015 07:56:30 -0000 1.129
+++ ChangeLog 26 May 2015 14:05:52 -0000 1.130
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/pymol
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.129 2015/05/05 07:56:30 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.130 2015/05/26 14:05:52 jlec Exp $
+
+ 26 May 2015; Justin Lecher <jlec@gentoo.org> pymol-1.7.0.1.ebuild:
+ Move to virtual
*pymol-1.7.6.0 (05 May 2015)
^ permalink raw reply [flat|nested] 4+ messages in thread
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2015-05-26 14:05 [gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol: pymol-1.7.0.1.ebuild ChangeLog Justin Lecher (jlec)
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2014-08-13 14:34 Andreas Schuerch (nativemad)
2014-07-10 9:29 JosA MarAa Alonso (nimiux)
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