* [gentoo-commits] gentoo-x86 commit in sci-biology/bwa: bwa-0.7.12.ebuild ChangeLog
@ 2015-03-03 15:17 Justin Lecher (jlec)
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher (jlec) @ 2015-03-03 15:17 UTC (permalink / raw
To: gentoo-commits
jlec 15/03/03 15:17:10
Modified: ChangeLog
Added: bwa-0.7.12.ebuild
Log:
Version BUmp; thanks Ted Tanberry
(Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path
1.14 sci-biology/bwa/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.14&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.14&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.13&r2=1.14
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- ChangeLog 11 Mar 2013 14:54:24 -0000 1.13
+++ ChangeLog 3 Mar 2015 15:17:10 -0000 1.14
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/bwa
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.13 2013/03/11 14:54:24 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.14 2015/03/03 15:17:10 jlec Exp $
+
+*bwa-0.7.12 (03 Mar 2015)
+
+ 03 Mar 2015; Justin Lecher <jlec@gentoo.org> +bwa-0.7.12.ebuild,
+ +files/bwa-0.7.12-Makefile.patch:
+ Version BUmp; thanks Ted Tanberry
11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -63,4 +69,3 @@
26 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+bwa-0.4.5.ebuild:
New package, ebuild written by me.
-
1.1 sci-biology/bwa/bwa-0.7.12.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild?rev=1.1&content-type=text/plain
Index: bwa-0.7.12.ebuild
===================================================================
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild,v 1.1 2015/03/03 15:17:10 jlec Exp $
EAPI=5
inherit eutils toolchain-funcs
DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
HOMEPAGE="http://bio-bwa.sourceforge.net/"
SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
LICENSE="GPL-3"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86 ~x64-macos"
PATCHES=( "${FILESDIR}"/${P}-Makefile.patch )
src_prepare() {
epatch ${PATCHES[@]}
tc-export CC AR
}
src_install() {
dobin bwa
doman bwa.1
exeinto /usr/libexec/${PN}
doexe qualfa2fq.pl xa2multi.pl
dodoc NEWS.md README-alt.md README.md
}
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/bwa: bwa-0.7.12.ebuild ChangeLog
@ 2015-04-08 13:35 Agostino Sarubbo (ago)
0 siblings, 0 replies; 3+ messages in thread
From: Agostino Sarubbo (ago) @ 2015-04-08 13:35 UTC (permalink / raw
To: gentoo-commits
ago 15/04/08 13:35:53
Modified: bwa-0.7.12.ebuild ChangeLog
Log:
Stable for amd64, wrt bug #544944
(Portage version: 2.2.14/cvs/Linux x86_64, RepoMan options: --include-arches="amd64", signed Manifest commit with key 7194459F)
Revision Changes Path
1.2 sci-biology/bwa/bwa-0.7.12.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild?r1=1.1&r2=1.2
Index: bwa-0.7.12.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- bwa-0.7.12.ebuild 3 Mar 2015 15:17:10 -0000 1.1
+++ bwa-0.7.12.ebuild 8 Apr 2015 13:35:53 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild,v 1.1 2015/03/03 15:17:10 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild,v 1.2 2015/04/08 13:35:53 ago Exp $
EAPI=5
@@ -13,7 +13,7 @@
LICENSE="GPL-3"
SLOT="0"
IUSE=""
-KEYWORDS="~amd64 ~x86 ~x64-macos"
+KEYWORDS="amd64 ~x86 ~x64-macos"
PATCHES=( "${FILESDIR}"/${P}-Makefile.patch )
1.17 sci-biology/bwa/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.17&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.17&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.16&r2=1.17
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -r1.16 -r1.17
--- ChangeLog 7 Apr 2015 14:32:24 -0000 1.16
+++ ChangeLog 8 Apr 2015 13:35:53 -0000 1.17
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/bwa
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.16 2015/04/07 14:32:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.17 2015/04/08 13:35:53 ago Exp $
+
+ 08 Apr 2015; Agostino Sarubbo <ago@gentoo.org> bwa-0.7.12.ebuild:
+ Stable for amd64, wrt bug #544944
03 Mar 2015; Justin Lecher <jlec@gentoo.org> -bwa-0.5.0-r1.ebuild,
-bwa-0.5.9.ebuild, -bwa-0.6.1.ebuild:
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/bwa: bwa-0.7.12.ebuild ChangeLog
@ 2015-04-19 9:59 Agostino Sarubbo (ago)
0 siblings, 0 replies; 3+ messages in thread
From: Agostino Sarubbo (ago) @ 2015-04-19 9:59 UTC (permalink / raw
To: gentoo-commits
ago 15/04/19 09:59:46
Modified: bwa-0.7.12.ebuild ChangeLog
Log:
Stable for x86, wrt bug #544944
(Portage version: 2.2.14/cvs/Linux x86_64, RepoMan options: --include-arches="x86", signed Manifest commit with key 7194459F)
Revision Changes Path
1.3 sci-biology/bwa/bwa-0.7.12.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild?r1=1.2&r2=1.3
Index: bwa-0.7.12.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- bwa-0.7.12.ebuild 8 Apr 2015 13:35:53 -0000 1.2
+++ bwa-0.7.12.ebuild 19 Apr 2015 09:59:46 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild,v 1.2 2015/04/08 13:35:53 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.7.12.ebuild,v 1.3 2015/04/19 09:59:46 ago Exp $
EAPI=5
@@ -13,7 +13,7 @@
LICENSE="GPL-3"
SLOT="0"
IUSE=""
-KEYWORDS="amd64 ~x86 ~x64-macos"
+KEYWORDS="amd64 x86 ~x64-macos"
PATCHES=( "${FILESDIR}"/${P}-Makefile.patch )
1.18 sci-biology/bwa/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.18&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.18&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.17&r2=1.18
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -r1.17 -r1.18
--- ChangeLog 8 Apr 2015 13:35:53 -0000 1.17
+++ ChangeLog 19 Apr 2015 09:59:46 -0000 1.18
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/bwa
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.17 2015/04/08 13:35:53 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.18 2015/04/19 09:59:46 ago Exp $
+
+ 19 Apr 2015; Agostino Sarubbo <ago@gentoo.org> bwa-0.7.12.ebuild:
+ Stable for x86, wrt bug #544944
08 Apr 2015; Agostino Sarubbo <ago@gentoo.org> bwa-0.7.12.ebuild:
Stable for amd64, wrt bug #544944
^ permalink raw reply [flat|nested] 3+ messages in thread
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2015-04-19 9:59 Agostino Sarubbo (ago)
2015-03-03 15:17 Justin Lecher (jlec)
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