[gentoo-commits] gentoo-x86 commit in sci-biology/plink: ChangeLog plink-1.90_pre140514.ebuild plink-1.07.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/plink: ChangeLog plink-1.90_pre140514.ebuild plink-1.07.ebuild

[Justin Lecher (jlec)]

jlec        14/05/19 14:13:36

  Modified:             ChangeLog
  Added:                plink-1.90_pre140514.ebuild
  Removed:              plink-1.07.ebuild
  Log:
  sci-biology/plink: Version BUmp, #510716
  
  (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

Revision  Changes    Path
1.15                 sci-biology/plink/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?rev=1.15&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?rev=1.15&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?r1=1.14&r2=1.15

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -r1.14 -r1.15
--- ChangeLog	11 Mar 2013 16:47:09 -0000	1.14
+++ ChangeLog	19 May 2014 14:13:36 -0000	1.15
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/plink
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.14 2013/03/11 16:47:09 jlec Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.15 2014/05/19 14:13:36 jlec Exp $
+
+*plink-1.90_pre140514 (19 May 2014)
+
+  19 May 2014; Justin Lecher <jlec@gentoo.org> -plink-1.07.ebuild,
+  +plink-1.90_pre140514.ebuild:
+  Version BUmp, #510716
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly



1.1                  sci-biology/plink/plink-1.90_pre140514.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild?rev=1.1&content-type=text/plain

Index: plink-1.90_pre140514.ebuild
===================================================================
# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild,v 1.1 2014/05/19 14:13:36 jlec Exp $

EAPI=5

inherit eutils toolchain-funcs

DESCRIPTION="Whole genome association analysis toolset"
HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/"
SRC_URI="http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> ${P}.zip"

LICENSE="GPL-2"
SLOT="0"
IUSE="lapack"
KEYWORDS="~amd64 ~x86"

DEPEND="
	app-arch/unzip
	virtual/pkgconfig"
RDEPEND="
	sys-libs/zlib
	lapack? ( virtual/lapack )"

S="${WORKDIR}/"

# Package collides with net-misc/putty. Renamed to p-link following discussion with Debian.
# Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream.

src_prepare() {
	use lapack || sed -i '/NO_LAPACK =/s/$/1/' "${S}/Makefile" || die

	sed \
		-e 's:zlib-1.2.8/zlib.h:zlib.h:g' \
		-i *.{c,h} || die

	sed \
		-e 's:g++:$(CXX):g' \
		-e 's:gcc:$(CC):g' \
		-e 's:gfortran:$(FC):g' \
		-i Makefile || die
	tc-export PKG_CONFIG
}

src_compile() {
	local blas
	emake \
		CXX=$(tc-getCXX) \
		CFLAGS="${CFLAGS}" \
		ZLIB="$($(tc-getPKG_CONFIG) --libs zlib)" \
		BLASFLAGS="$(usex lapack "" "$($(tc-getPKG_CONFIG) --libs lapack)")"
}

src_install() {
	newbin plink p-link
}