[gentoo-commits] gentoo-x86 commit in sci-biology/profphd: profphd-1.0.39.ebuild ChangeLog profphd-1.0.40.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/profphd: profphd-1.0.39.ebuild ChangeLog profphd-1.0.40.ebuild

[Justin Lecher (jlec)]

jlec        14/04/24 11:38:57

  Modified:             profphd-1.0.39.ebuild ChangeLog
  Added:                profphd-1.0.40.ebuild
  Log:
  sci-biology/profphd: Fix for newer perl, version Bump
  
  (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

Revision  Changes    Path
1.4                  sci-biology/profphd/profphd-1.0.39.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/profphd/profphd-1.0.39.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/profphd/profphd-1.0.39.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/profphd/profphd-1.0.39.ebuild?r1=1.3&r2=1.4

Index: profphd-1.0.39.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/profphd/profphd-1.0.39.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- profphd-1.0.39.ebuild	24 Apr 2013 14:28:05 -0000	1.3
+++ profphd-1.0.39.ebuild	24 Apr 2014 11:38:57 -0000	1.4
@@ -1,9 +1,11 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/profphd/profphd-1.0.39.ebuild,v 1.3 2013/04/24 14:28:05 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/profphd/profphd-1.0.39.ebuild,v 1.4 2014/04/24 11:38:57 jlec Exp $
 
 EAPI=5
 
+inherit eutils
+
 DESCRIPTION="Secondary structure and solvent accessibility predictor"
 HOMEPAGE="https://rostlab.org/owiki/index.php/PROFphd_-_Secondary_Structure,_Solvent_Accessibility_and_Transmembrane_Helices_Prediction"
 SRC_URI="ftp://rostlab.org/profphd/${P}.tar.xz"
@@ -24,6 +26,7 @@
 	sed \
 		-e '/ln -s/s:prof$:profphd:g' \
 		-i src/prof/Makefile || die
+	epatch "${FILESDIR}"/${P}-perl.patch
 }
 
 src_compile() {



1.4                  sci-biology/profphd/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/profphd/ChangeLog?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/profphd/ChangeLog?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/profphd/ChangeLog?r1=1.3&r2=1.4

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/profphd/ChangeLog,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- ChangeLog	24 Apr 2013 14:28:05 -0000	1.3
+++ ChangeLog	24 Apr 2014 11:38:57 -0000	1.4
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/profphd
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/profphd/ChangeLog,v 1.3 2013/04/24 14:28:05 jlec Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/profphd/ChangeLog,v 1.4 2014/04/24 11:38:57 jlec Exp $
+
+*profphd-1.0.40 (24 Apr 2014)
+
+  24 Apr 2014; Justin Lecher <jlec@gentoo.org> profphd-1.0.39.ebuild,
+  +profphd-1.0.40.ebuild, +files/profphd-1.0.39-perl.patch:
+  Fix for newer perl, version Bump
 
   24 Apr 2013; Justin Lecher <jlec@gentoo.org> profphd-1.0.39.ebuild:
   Updated deps



1.1                  sci-biology/profphd/profphd-1.0.40.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/profphd/profphd-1.0.40.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/profphd/profphd-1.0.40.ebuild?rev=1.1&content-type=text/plain

Index: profphd-1.0.40.ebuild
===================================================================
# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/profphd/profphd-1.0.40.ebuild,v 1.1 2014/04/24 11:38:57 jlec Exp $

EAPI=5

inherit eutils

DESCRIPTION="Secondary structure and solvent accessibility predictor"
HOMEPAGE="https://rostlab.org/owiki/index.php/PROFphd_-_Secondary_Structure,_Solvent_Accessibility_and_Transmembrane_Helices_Prediction"
SRC_URI="ftp://rostlab.org/profphd/${P}.tar.xz"

SLOT="0"
LICENSE="GPL-2"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""

DEPEND="dev-lang/perl"
RDEPEND="${DEPEND}
	dev-perl/librg-utils-perl
	sci-libs/profnet
	sci-libs/profphd-utils
"

src_prepare() {
	sed \
		-e '/ln -s/s:prof$:profphd:g' \
		-i src/prof/Makefile || die
	epatch "${FILESDIR}"/${PN}-1.0.39-perl.patch
}

src_compile() {
	emake prefix="${EPREFIX}/usr"
}

src_install() {
	emake prefix="${EPREFIX}/usr" DESTDIR="${D}" install
}