[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: biopython-1.62-r1.ebuild ChangeLog

[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: biopython-1.62-r1.ebuild ChangeLog

[Justin Lecher (jlec)]

jlec        13/12/29 00:56:58

  Modified:             ChangeLog
  Added:                biopython-1.62-r1.ebuild
  Log:
  sci-biology/biopython: Add additional patch from Martin Mokrejš
  
  (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

Revision  Changes    Path
1.73                 sci-biology/biopython/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.73&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.73&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.72&r2=1.73

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.72
retrieving revision 1.73
diff -u -r1.72 -r1.73
--- ChangeLog	17 Sep 2013 16:07:56 -0000	1.72
+++ ChangeLog	29 Dec 2013 00:56:58 -0000	1.73
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/biopython
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.72 2013/09/17 16:07:56 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.73 2013/12/29 00:56:58 jlec Exp $
+
+*biopython-1.62-r1 (29 Dec 2013)
+
+  29 Dec 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.62-r1.ebuild,
+  +files/biopython-1.62-SffIO.patch:
+  Add additional patch from Martin Mokrejš
 
 *biopython-1.62 (17 Sep 2013)
 



1.1                  sci-biology/biopython/biopython-1.62-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild?rev=1.1&content-type=text/plain

Index: biopython-1.62-r1.ebuild
===================================================================
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild,v 1.1 2013/12/29 00:56:58 jlec Exp $

EAPI=5

PYTHON_COMPAT=( python{2_6,2_7} )

inherit distutils-r1 eutils

DESCRIPTION="Python modules for computational molecular biology"
HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"

LICENSE="HPND"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
IUSE="mysql postgres"

REQUIRED_USE="${PYTHON_REQUIRED_USE}"

RDEPEND="${PYTHON_DEPS}
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/pygraphviz[${PYTHON_USEDEP}]
	dev-python/reportlab[${PYTHON_USEDEP}]
	media-gfx/pydot[${PYTHON_USEDEP}]
	mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
	postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
DEPEND="${RDEPEND}
	sys-devel/flex"

DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )

PATCHES=( "${FILESDIR}/${PN}-1.62-SffIO.patch" )

python_test() {
	cd Tests || die
	${PYTHON} run_tests.py || die
}

python_install_all() {
	distutils-r1_python_install_all

	dodir /usr/share/${PN}
	cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
}