* [gentoo-commits] gentoo-x86 commit in sci-chemistry/namd: namd-2.9-r1.ebuild ChangeLog
@ 2013-11-30 4:29 Christoph Junghans (ottxor)
0 siblings, 0 replies; 2+ messages in thread
From: Christoph Junghans (ottxor) @ 2013-11-30 4:29 UTC (permalink / raw
To: gentoo-commits
ottxor 13/11/30 04:29:21
Modified: ChangeLog
Added: namd-2.9-r1.ebuild
Log:
clean up (fftw3, ldflags, no tcsh)
(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key C2000586)
Revision Changes Path
1.18 sci-chemistry/namd/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?rev=1.18&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?rev=1.18&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?r1=1.17&r2=1.18
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -r1.17 -r1.18
--- ChangeLog 18 Oct 2013 16:25:04 -0000 1.17
+++ ChangeLog 30 Nov 2013 04:29:21 -0000 1.18
@@ -1,6 +1,11 @@
# ChangeLog for sci-chemistry/namd
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.17 2013/10/18 16:25:04 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.18 2013/11/30 04:29:21 ottxor Exp $
+
+*namd-2.9-r1 (30 Nov 2013)
+
+ 30 Nov 2013; Christoph Junghans <ottxor@gentoo.org> +namd-2.9-r1.ebuild:
+ clean up (fftw3, ldflags, no tcsh)
*namd-2.9 (18 Oct 2013)
1.1 sci-chemistry/namd/namd-2.9-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild?rev=1.1&content-type=text/plain
Index: namd-2.9-r1.ebuild
===================================================================
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild,v 1.1 2013/11/30 04:29:21 ottxor Exp $
EAPI=5
inherit eutils multilib toolchain-funcs flag-o-matic
DESCRIPTION="A powerful and highly parallelized molecular dynamics code"
LICENSE="namd"
HOMEPAGE="http://www.ks.uiuc.edu/Research/namd/"
MY_PN="NAMD"
SRC_URI="${MY_PN}_${PV}_Source.tar.gz"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
RESTRICT="fetch"
DEPEND="
|| ( >=sys-cluster/charm-6.5.1-r2 <=sys-cluster/charm-6.5.1-r1[static-libs] )
sci-libs/fftw:3.0
dev-lang/tcl"
RDEPEND=${DEPEND}
NAMD_ARCH="Linux-x86_64-g++"
NAMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD"
S="${WORKDIR}/${MY_PN}_${PV}_Source"
pkg_nofetch() {
echo
einfo "Please download ${MY_PN}_${PV}_Source.tar.gz from"
einfo "${NAMD_DOWNLOAD}"
einfo "after agreeing to the license and then move it to"
einfo "${DISTDIR}"
einfo "Be sure to select the ${PV} version!"
echo
}
src_prepare() {
CHARM_VERSION=$(best_version sys-cluster/charm | cut -d- -f3)
# apply a few small fixes to make NAMD compile and
# link to the proper libraries
epatch "${FILESDIR}"/namd-2.9-gentoo.patch
epatch "${FILESDIR}"/namd-2.7-iml-dec.patch
sed \
-e "s:charm-.\+:charm-${CHARM_VERSION}:" \
-i Make.charm || die
# Remove charm distribution. We don't need it.
rm -f charm-6.4.0.tar || die
# proper compiler and cflags
sed \
-e "s/g++.*/$(tc-getCXX)/" \
-e "s/gcc.*/$(tc-getCC)/" \
-e "s/CXXOPTS = .*/CXXOPTS = ${CXXFLAGS} ${LDFLAGS}/" \
-e "s/COPTS = .*/COPTS = ${CFLAGS} ${LDFLAGS}/" \
-i arch/${NAMD_ARCH}.arch || die
sed \
-e "s/gentoo-libdir/$(get_libdir)/g" \
-e "s/gentoo-charm/charm-${CHARM_VERSION}/g" \
-i Makefile || die "Failed gentooizing Makefile."
sed -e "s@/lib@/$(get_libdir)@g" -e '/FFTDIR=/s@=.*@=/usr@' -i arch/Linux-x86_64.fftw3 || die
sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.tcl || die
}
src_configure() {
# configure
./config ${NAMD_ARCH} --with-fftw3 --charm-arch . || die
}
src_compile() {
# build namd
cd "${S}/${NAMD_ARCH}"
emake
}
src_install() {
dodoc announce.txt license.txt notes.txt
cd "${S}/${NAMD_ARCH}"
# the binaries
dobin ${PN}2 psfgen flipbinpdb flipdcd
}
pkg_postinst() {
echo
einfo "For detailed instructions on how to run and configure"
einfo "NAMD please consults the extensive documentation at"
einfo "http://www.ks.uiuc.edu/Research/namd/"
einfo "and the NAMD tutorials available at"
einfo "http://www.ks.uiuc.edu/Training/Tutorials/"
einfo "Have fun :)"
echo
}
^ permalink raw reply [flat|nested] 2+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/namd: namd-2.9-r1.ebuild ChangeLog
@ 2013-11-30 23:28 Christoph Junghans (ottxor)
0 siblings, 0 replies; 2+ messages in thread
From: Christoph Junghans (ottxor) @ 2013-11-30 23:28 UTC (permalink / raw
To: gentoo-commits
ottxor 13/11/30 23:28:19
Modified: namd-2.9-r1.ebuild ChangeLog
Log:
fixed deps
(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key C2000586)
Revision Changes Path
1.2 sci-chemistry/namd/namd-2.9-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild?r1=1.1&r2=1.2
Index: namd-2.9-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- namd-2.9-r1.ebuild 30 Nov 2013 04:29:21 -0000 1.1
+++ namd-2.9-r1.ebuild 30 Nov 2013 23:28:19 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild,v 1.1 2013/11/30 04:29:21 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild,v 1.2 2013/11/30 23:28:19 ottxor Exp $
EAPI=5
@@ -20,12 +20,13 @@
RESTRICT="fetch"
-DEPEND="
- || ( >=sys-cluster/charm-6.5.1-r2 <=sys-cluster/charm-6.5.1-r1[static-libs] )
+RDEPEND="
+ >=sys-cluster/charm-6.5.1-r2
sci-libs/fftw:3.0
dev-lang/tcl"
-RDEPEND=${DEPEND}
+DEPEND="${RDEPEND}
+ app-shells/tcsh"
NAMD_ARCH="Linux-x86_64-g++"
1.19 sci-chemistry/namd/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?rev=1.19&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?rev=1.19&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/namd/ChangeLog?r1=1.18&r2=1.19
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -r1.18 -r1.19
--- ChangeLog 30 Nov 2013 04:29:21 -0000 1.18
+++ ChangeLog 30 Nov 2013 23:28:19 -0000 1.19
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/namd
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.18 2013/11/30 04:29:21 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.19 2013/11/30 23:28:19 ottxor Exp $
+
+ 30 Nov 2013; Christoph Junghans <ottxor@gentoo.org> namd-2.9-r1.ebuild:
+ fixed deps
*namd-2.9-r1 (30 Nov 2013)
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