* [gentoo-commits] gentoo-x86 commit in sci-chemistry/ccpn: ChangeLog ccpn-2.3.1_p131015.ebuild
@ 2013-10-15 10:35 Justin Lecher (jlec)
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From: Justin Lecher (jlec) @ 2013-10-15 10:35 UTC (permalink / raw
To: gentoo-commits
jlec 13/10/15 10:35:48
Modified: ChangeLog
Added: ccpn-2.3.1_p131015.ebuild
Log:
sci-chemistry/ccpn: Todays python patches
(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path
1.124 sci-chemistry/ccpn/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?rev=1.124&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?rev=1.124&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?r1=1.123&r2=1.124
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v
retrieving revision 1.123
retrieving revision 1.124
diff -u -r1.123 -r1.124
--- ChangeLog 10 Oct 2013 10:22:40 -0000 1.123
+++ ChangeLog 15 Oct 2013 10:35:48 -0000 1.124
@@ -1,6 +1,11 @@
# ChangeLog for sci-chemistry/ccpn
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.123 2013/10/10 10:22:40 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.124 2013/10/15 10:35:48 jlec Exp $
+
+*ccpn-2.3.1_p131015 (15 Oct 2013)
+
+ 15 Oct 2013; Justin Lecher <jlec@gentoo.org> +ccpn-2.3.1_p131015.ebuild:
+ Todays python patches
*ccpn-2.3.1_p131010 (10 Oct 2013)
1.1 sci-chemistry/ccpn/ccpn-2.3.1_p131015.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131015.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131015.ebuild?rev=1.1&content-type=text/plain
Index: ccpn-2.3.1_p131015.ebuild
===================================================================
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131015.ebuild,v 1.1 2013/10/15 10:35:48 jlec Exp $
EAPI=5
PYTHON_COMPAT=( python{2_6,2_7} )
PYTHON_REQ_USE="ssl,tk"
inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
PATCHSET="${PV##*_p}"
MY_PN="${PN}mr"
MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
MY_MAJOR="$(get_version_component_range 1-3)"
DESCRIPTION="The Collaborative Computing Project for NMR"
HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
[[ -n ${PATCHSET} ]] \
&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
SLOT="0"
LICENSE="|| ( CCPN LGPL-2.1 )"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="+opengl"
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
RDEPEND="
${PYTHON_DEPS}
dev-lang/tk[threads]
dev-python/numpy[${PYTHON_USEDEP}]
dev-tcltk/tix
=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
sci-biology/psipred
x11-libs/libXext
x11-libs/libX11
opengl? (
media-libs/freeglut
dev-python/pyglet[${PYTHON_USEDEP}] )"
DEPEND="${RDEPEND}"
RESTRICT="mirror"
S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
src_prepare() {
[[ -n ${PATCHSET} ]] && \
epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
epatch "${FILESDIR}"/${MY_PV}-parallel.patch
append-lfs-flags
sed \
-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-e "s:weights_s:weights:g" \
-i python/ccpnmr/analysis/wrappers/Psipred.py || die
local tk_ver
local myconf
tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
if use opengl; then
GLUT_NEED_INIT="-DNEED_GLUT_INIT"
IGNORE_GL_FLAG=""
GL_FLAG="-DUSE_GL_TRUE"
GL_DIR="${EPREFIX}/usr"
GL_LIB="-lglut -lGLU -lGL"
GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
else
IGNORE_GL_FLAG="-DIGNORE_GL"
GL_FLAG="-DUSE_GL_FALSE"
fi
GLUT_NOT_IN_GL=""
GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
rm -rf data model doc license || die
sed \
-e "s|/usr|${EPREFIX}/usr|g" \
-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
c/environment_default.txt > c/environment.txt || die
sed \
-e 's:ln -s:cp -f:g' \
-i $(find python -name linkSharedObjs) || die
}
src_compile() {
emake -C c all
emake -C c links
}
src_install() {
local libdir
local tkver
local _wrapper
find . -name "*.pyc" -type f -delete || die
libdir=$(get_libdir)
tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
for wrapper in ${_wrapper}; do
sed \
-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-e "s|gentoopython|${EPYTHON}|g" \
-e "s|gentoousr|${EPREFIX}/usr|g" \
-e "s|//|/|g" \
"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
dobin "${T}"/${wrapper}
done
local in_path=$(python_get_sitedir)/${PN}
local files
local pydocs
pydocs="$(find python -name doc -type d)"
rm -rf ${pydocs} || die
for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
sed \
-e 's|#from __future__|from __future__|g' \
-i ${i} || die
done
dodir ${in_path#${EPREFIX}}/c
ebegin "Installing main files"
python_moduleinto ${PN}
python_domodule python
eend
ebegin "Adjusting permissions"
for _file in $(find "${ED}" -type f -name "*so"); do
chmod 755 ${_file}
done
eend
python_optimize
}
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2013-10-15 10:35 [gentoo-commits] gentoo-x86 commit in sci-chemistry/ccpn: ChangeLog ccpn-2.3.1_p131015.ebuild Justin Lecher (jlec)
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