[gentoo-commits] gentoo-x86 commit in sci-biology/allpathslg: ChangeLog allpathslg-42337.ebuild allpathslg-47093.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/allpathslg: ChangeLog allpathslg-42337.ebuild allpathslg-47093.ebuild

[Justin Lecher (jlec)]

jlec        13/07/17 08:33:08

  Modified:             ChangeLog allpathslg-42337.ebuild
  Added:                allpathslg-47093.ebuild
  Log:
  sci-biology/allpathslg: Version Bump
  
  (Portage version: 2.2.0_alpha188/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

Revision  Changes    Path
1.15                 sci-biology/allpathslg/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?rev=1.15&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?rev=1.15&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?r1=1.14&r2=1.15

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -r1.14 -r1.15
--- ChangeLog	11 Mar 2013 14:36:10 -0000	1.14
+++ ChangeLog	17 Jul 2013 08:33:08 -0000	1.15
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/allpathslg
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.14 2013/03/11 14:36:10 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.15 2013/07/17 08:33:08 jlec Exp $
+
+*allpathslg-47093 (17 Jul 2013)
+
+  17 Jul 2013; Justin Lecher <jlec@gentoo.org> allpathslg-42337.ebuild,
+  +allpathslg-47093.ebuild:
+  Version Bump
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly



1.5                  sci-biology/allpathslg/allpathslg-42337.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild?r1=1.4&r2=1.5

Index: allpathslg-42337.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- allpathslg-42337.ebuild	20 Feb 2013 15:56:10 -0000	1.4
+++ allpathslg-42337.ebuild	17 Jul 2013 08:33:08 -0000	1.5
@@ -1,6 +1,6 @@
 # Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.4 2013/02/20 15:56:10 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.5 2013/07/17 08:33:08 jlec Exp $
 
 EAPI=4
 
@@ -13,7 +13,7 @@
 LICENSE="MIT"
 SLOT="0"
 IUSE=""
-KEYWORDS="amd64"
+KEYWORDS="amd64 ~x86"
 
 DEPEND="
 	dev-libs/boost



1.1                  sci-biology/allpathslg/allpathslg-47093.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-47093.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-47093.ebuild?rev=1.1&content-type=text/plain

Index: allpathslg-47093.ebuild
===================================================================
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-47093.ebuild,v 1.1 2013/07/17 08:33:08 jlec Exp $

EAPI=5

inherit autotools flag-o-matic

DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"

LICENSE="MIT"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"

DEPEND="
	dev-libs/boost
	!sci-biology/allpaths
	sci-biology/vaal"
RDEPEND=""

src_prepare() {
	sed -i 's/-ggdb//' configure.ac || die
	eautoreconf
}

src_install() {
	default
#	einstall || die
	# Provided by sci-biology/vaal
	for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
		rm "${D}/usr/bin/$i" || die
	done
}