[gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/

["Justin Lecher" <jlec@gentoo.org>]

commit:     1181076dda88bff9cba8aa1432fdcaa5a14ba144
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:44:19 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 08:44:19 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1181076d

sci-chemistry/talosn: New package

Package-Manager: portage-2.2.0_alpha180

---
 sci-chemistry/talosn/ChangeLog                     | 10 ++++
 sci-chemistry/talosn/metadata.xml                  |  5 ++
 .../talosn/talosn-4.01.2013.148.15.55.ebuild       | 59 ++++++++++++++++++++++
 3 files changed, 74 insertions(+)

diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
new file mode 100644
index 0000000..dea3c84
--- /dev/null
+++ b/sci-chemistry/talosn/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/talosn
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*talosn-4.01.2013.148.15.55 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml:
+  New package
+

diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
new file mode 100644
index 0000000..51fdeda
--- /dev/null
+++ b/sci-chemistry/talosn/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+</pkgmetadata>

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
new file mode 100644
index 0000000..ac569c3
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+	local s64
+	use amd64 || s64="_x64"
+	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+}
+
+src_install() {
+	local TALOSN="/opt/${PN}"
+	exeinto ${TALOSN}/bin
+	doexe bin/*
+
+	exeinto ${TALOSN}/com
+	doexe com/*
+
+	exeinto /opt/bin
+	doexe talosn{,_ss}
+
+	insinto ${TALOSN}
+	doins -r tab
+
+	java-pkg_jarinto ${TALOSN}
+	java-pkg_dojar rama.jar
+
+	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r demo
+	fi
+
+	cat >> "${T}"/40talosn <<- EOF
+	TALOSN_DIR="${EPREFIX}/${TALOSN}"
+	EOF
+	doenvd "${T}"/40talosn
+}