[gentoo-commits] proj/sci:ccp4 commit in: /

["Justin Lecher" <jlec@gentoo.org>]

commit:     e2ebd47001ac3f20d9f10b3fea8091dacdfa757b
Author:     Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed May 15 08:09:29 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 15 08:09:29 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e2ebd470

Merge https://github.com/gentoo-science/sci


 dev-lang/berkeley_upc/ChangeLog                    |     6 +
 dev-lang/berkeley_upc/Manifest                     |     2 +-
 ...pc-2.16.0.ebuild => berkeley_upc-2.16.2.ebuild} |     0
 dev-lang/berkeley_upc_translator/ChangeLog         |     8 +
 dev-lang/berkeley_upc_translator/Manifest          |     2 +-
 ...build => berkeley_upc_translator-2.16.2.ebuild} |     5 +-
 ...keley_upc_translator-2.16.0-stackoverflow.patch |    18 -
 dev-python/pysparse/ChangeLog                      |    11 +-
 dev-python/pysparse/Manifest                       |     3 +-
 dev-python/pysparse/metadata.xml                   |     4 +-
 dev-python/pysparse/pysparse-1.1.1-r1.ebuild       |    60 +
 dev-python/pysparse/pysparse-1.1.1.ebuild          |    53 -
 dev-python/pysparse/pysparse-1.1.ebuild            |    53 -
 media-gfx/brlcad/ChangeLog                         |     5 +-
 media-gfx/brlcad/Manifest                          |     1 +
 .../{brlcad-7.20.4.ebuild => brlcad-7.22.0.ebuild} |    16 +-
 media-gfx/brlcad/brlcad-9999.ebuild                |     8 +-
 sci-biology/mira/ChangeLog                         |     6 +
 sci-biology/mira/Manifest                          |     1 +
 .../mira/{mira-3.9.9.ebuild => mira-3.9.15.ebuild} |     9 +-
 sci-chemistry/curvefit/ChangeLog                   |     3 +
 sci-chemistry/curvefit/curvefit-1.40.ebuild        |     6 +-
 sci-chemistry/gromacs/ChangeLog                    |    10 +
 sci-chemistry/gromacs/Manifest                     |     2 +
 .../files/gromacs-4.5.7-cmake-cpp-asm.patch        |    43 +
 ...gromacs-9999.ebuild => gromacs-4.5.9999.ebuild} |    65 +-
 sci-chemistry/gromacs/metadata.xml                 |     1 +
 sci-chemistry/modelfree/ChangeLog                  |    12 +
 sci-chemistry/modelfree/modelfree-4.20.ebuild      |    33 +-
 sci-chemistry/ucsf-tools/ChangeLog                 |     8 +
 sci-chemistry/ucsf-tools/Manifest                  |     2 +
 sci-chemistry/ucsf-tools/metadata.xml              |    31 +-
 sci-chemistry/ucsf-tools/ucsf-tools-9999.ebuild    |     6 +-
 sci-libs/mkl/ChangeLog                             |     5 +
 sci-libs/mkl/Manifest                              |     4 +
 ...mkl-11.0.2.146.ebuild => mkl-11.0.3.163.ebuild} |     4 +-
 sci-libs/nfft/ChangeLog                            |    28 -
 sci-libs/nfft/Manifest                             |     1 -
 sci-libs/nfft/metadata.xml                         |     9 -
 sci-libs/nfft/nfft-3.2.2.ebuild                    |    32 -
 sci-mathematics/scilab/Manifest                    |     2 +-
 .../scilab/files/scilab-5.4.0-builddocs.patch      |   353 -
 .../scilab/files/scilab-5.4.0-fortran-link.patch   |    22 -
 .../scilab/files/scilab-5.4.0-java-heap.patch      |    12 -
 ... scilab-5.4.1-fix-random-runtime-failure.patch} |     0
 ...wlinks.patch => scilab-5.4.1-followlinks.patch} |     0
 ....0-gluegen.patch => scilab-5.4.1-gluegen.patch} |     0
 .../scilab/files/scilab-5.4.1-java-heap.patch      |    14 +
 .../{scilab-5.4.0.ebuild => scilab-5.4.1.ebuild}   |    45 +-
 sci-physics/lammps/ChangeLog                       |    31 +
 sci-physics/lammps/Manifest                        |     1 +
 .../lammps/files/Makefile.gentoo-serial.patch      |   111 +
 sci-physics/lammps/lammps-20130512.ebuild          |    65 +
 sci-physics/lammps/metadata.xml                    |    32 +
 sys-cluster/lustre/ChangeLog                       |    52 +
 ...01-LU-1812-kernel-3.7-FC18-server-patches.patch |   380 +
 ...rnel-3.0-SuSE-and-3.6-FC18-server-patches.patch | 21302 -------------------
 ...el-sock_map_fd-replaced-by-sock_alloc_fi.patch} |     4 +-
 ...-kernel-Kernel-update-for-3.7.2-201.fc18.patch} |    22 +-
 ...at-posix_acl_-to-from-_xattr-take-user_n.patch} |    12 +-
 ...05-LU-2800-llite-introduce-local-getname.patch} |    16 +-
 ...tch => 0006-LU-2987-llite-rcu-free-inode.patch} |     8 +-
 ...0-kernel-3.8-upstream-removes-vmtruncate.patch} |     8 +-
 ...2850-kernel-3.8-upstream-kills-daemonize.patch} |   167 +-
 ...d-make-AC-check-for-linux-arch-sandbox-f.patch} |    10 +-
 ...rnel-3.9-hlist_for_each_entry-uses-3-args.patch |     8 +-
 ...79-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch |    10 +-
 ...uild-fix-compilation-error-with-gcc-4.7.2.patch |    43 +
 ...fids-fix-compilation-error-with-gcc-4.7.2.patch |    29 -
 ...7-build-zfs-0.6.1-kmod-dkms-compatibility.patch |  1038 -
 sys-cluster/lustre/lustre-9999.ebuild              |    29 +-
 71 files changed, 1196 insertions(+), 23206 deletions(-)