[gentoo-commits] gentoo-x86 commit in sci-chemistry/tm-align: metadata.xml ChangeLog tm-align-20130508.ebuild

[gentoo-commits] gentoo-x86 commit in sci-chemistry/tm-align: metadata.xml ChangeLog tm-align-20130508.ebuild

[Justin Lecher (jlec)]

jlec        13/05/11 12:39:55

  Modified:             metadata.xml ChangeLog
  Added:                tm-align-20130508.ebuild
  Log:
  sci-chemistry/tm-align: Version Bump
  
  (Portage version: 2.2.0_alpha174/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

Revision  Changes    Path
1.2                  sci-chemistry/tm-align/metadata.xml

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/metadata.xml?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/metadata.xml?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/metadata.xml?r1=1.1&r2=1.2

Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/metadata.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- metadata.xml	21 Mar 2012 12:18:47 -0000	1.1
+++ metadata.xml	11 May 2013 12:39:55 -0000	1.2
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<herd>sci-chemistry</herd>
-	<maintainer>
-		<email>jlec@gentoo.org</email>
-	</maintainer>
-	<longdescription>
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+  <longdescription>
 TM-align is a computer algorithm for protein structure alignment using dynamic 
 programming and TM-score rotation matrix. An optimal alignment between two 
 proteins, as well as the TM-score, will be reported for each comparison. The 



1.5                  sci-chemistry/tm-align/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?r1=1.4&r2=1.5

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- ChangeLog	5 Feb 2013 18:30:14 -0000	1.4
+++ ChangeLog	11 May 2013 12:39:55 -0000	1.5
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/tm-align
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.4 2013/02/05 18:30:14 ulm Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.5 2013/05/11 12:39:55 jlec Exp $
+
+*tm-align-20130508 (11 May 2013)
+
+  11 May 2013; Justin Lecher <jlec@gentoo.org> +tm-align-20130508.ebuild,
+  metadata.xml:
+  Version Bump
 
   05 Feb 2013; Ulrich Müller <ulm@gentoo.org> tm-align-20120124.ebuild,
   tm-align-20120707.ebuild:



1.1                  sci-chemistry/tm-align/tm-align-20130508.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20130508.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20130508.ebuild?rev=1.1&content-type=text/plain

Index: tm-align-20130508.ebuild
===================================================================
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20130508.ebuild,v 1.1 2013/05/11 12:39:55 jlec Exp $

EAPI=5

inherit cmake-utils flag-o-matic fortran-2

DESCRIPTION="Quick & Accurate Structural Alignment"
HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/TM-align/"
SRC_URI="http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools${PV}.tar.gz"

LICENSE="tm-align"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
IUSE="static custom-cflags"

S="${WORKDIR}"

src_prepare() {
	cp "${FILESDIR}"/CMakeLists.txt . || die
	use static && append-fflags -static && append-ldflags -static
	# recommended by upstream
	use custom-cflags || replace-flags -O* -O3 && append-fflags -ffast-math
}