[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: metadata.xml ChangeLog biopython-1.61.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: metadata.xml ChangeLog biopython-1.61.ebuild

[Justin Lecher (jlec)]

jlec        13/04/26 10:15:58

  Modified:             metadata.xml ChangeLog
  Added:                biopython-1.61.ebuild
  Log:
  sci-biology/biopython: Version Bump
  
  (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

Revision  Changes    Path
1.8                  sci-biology/biopython/metadata.xml

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/metadata.xml?rev=1.8&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/metadata.xml?rev=1.8&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/metadata.xml?r1=1.7&r2=1.8

Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/metadata.xml,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- metadata.xml	26 Aug 2009 14:45:14 -0000	1.7
+++ metadata.xml	26 Apr 2013 10:15:58 -0000	1.8
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-biology</herd>
+  <herd>sci-biology</herd>
 </pkgmetadata>



1.69                 sci-biology/biopython/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.69&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.69&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.68&r2=1.69

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.68
retrieving revision 1.69
diff -u -r1.68 -r1.69
--- ChangeLog	14 Dec 2012 10:00:10 -0000	1.68
+++ ChangeLog	26 Apr 2013 10:15:58 -0000	1.69
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/biopython
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.68 2012/12/14 10:00:10 ulm Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.69 2013/04/26 10:15:58 jlec Exp $
+
+*biopython-1.61 (26 Apr 2013)
+
+  26 Apr 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.61.ebuild,
+  metadata.xml:
+  Version Bump
 
   14 Dec 2012; Ulrich Müller <ulm@gentoo.org> biopython-1.57.ebuild,
   biopython-1.58.ebuild, biopython-1.59.ebuild:



1.1                  sci-biology/biopython/biopython-1.61.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild?rev=1.1&content-type=text/plain

Index: biopython-1.61.ebuild
===================================================================
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild,v 1.1 2013/04/26 10:15:58 jlec Exp $

EAPI=5

PYTHON_COMPAT=( python{2_6,2_7} )

inherit distutils-r1

DESCRIPTION="Python modules for computational molecular biology"
HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"

LICENSE="HPND"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86"
IUSE="mysql postgres"

RDEPEND="
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/pygraphviz[${PYTHON_USEDEP}]
	dev-python/reportlab[${PYTHON_USEDEP}]
	media-gfx/pydot[${PYTHON_USEDEP}]
	mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
	postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
DEPEND="${RDEPEND}
	sys-devel/flex"

#PYTHON_CFLAGS=("2.* + -fno-strict-aliasing")

#DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1"
DOCS=( CONTRIB DEPRECATED NEWS README )
#PYTHON_MODNAME="Bio BioSQL"

#PATCHES=( "${FILESDIR}"/${PN}-1.51-flex.patch )

python_test() {
	cd Tests
	${PYTHON} run_tests.py
}

python_install_all() {
	distutils-r1_python_install_all

	insinto /usr/share/doc/${PF}
	doins -r Doc/*
	insinto /usr/share/${PN}
	cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
}