* [gentoo-commits] gentoo-x86 commit in sci-chemistry/pdb-tools: ChangeLog pdb-tools-0.1.4-r4.ebuild
@ 2013-04-16 8:57 Justin Lecher (jlec)
0 siblings, 0 replies; 2+ messages in thread
From: Justin Lecher (jlec) @ 2013-04-16 8:57 UTC (permalink / raw
To: gentoo-commits
jlec 13/04/16 08:57:44
Modified: ChangeLog pdb-tools-0.1.4-r4.ebuild
Log:
sci-chemistry/pdb-tools: This package cannot be installed for multiple py abis
(Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
Revision Changes Path
1.10 sci-chemistry/pdb-tools/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?r1=1.9&r2=1.10
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- ChangeLog 16 Apr 2013 08:41:10 -0000 1.9
+++ ChangeLog 16 Apr 2013 08:57:43 -0000 1.10
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/pdb-tools
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.9 2013/04/16 08:41:10 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.10 2013/04/16 08:57:43 jlec Exp $
+
+ 16 Apr 2013; Justin Lecher <jlec@gentoo.org> pdb-tools-0.1.4-r4.ebuild:
+ This package cannot be installed for multiple py abis
*pdb-tools-0.1.4-r4 (16 Apr 2013)
1.2 sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild?r1=1.1&r2=1.2
Index: pdb-tools-0.1.4-r4.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- pdb-tools-0.1.4-r4.ebuild 16 Apr 2013 08:41:10 -0000 1.1
+++ pdb-tools-0.1.4-r4.ebuild 16 Apr 2013 08:57:43 -0000 1.2
@@ -1,12 +1,12 @@
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild,v 1.1 2013/04/16 08:41:10 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild,v 1.2 2013/04/16 08:57:43 jlec Exp $
EAPI=5
PYTHON_COMPAT=( python{2_6,2_7} pypy{1_8,1_9} )
-inherit fortran-2 python-r1 toolchain-funcs
+inherit fortran-2 python-single-r1 toolchain-funcs
DESCRIPTION="Tools for manipulating and doing calculations on wwPDB macromolecule structure files"
HOMEPAGE="http://code.google.com/p/pdb-tools/"
@@ -22,6 +22,11 @@
S="${WORKDIR}"/${PN}_${PV}
+pkg_setup() {
+ python-single-r1_pkg_setup
+ fortran-2_pkg_setup
+}
+
src_prepare() {
sed \
-e "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" \
@@ -50,14 +55,18 @@
doins -r pdb_data/peptides
rm -rf pdb_data/peptides || die
- for script in pdb_*.py; do
- python_foreach_impl python_newscript ${script} ${script%.py}
- done
+ python_domodule helper pdb_data
- python_foreach_impl python_domodule helper pdb_data
+ python_moduleinto ${PN/-/_}
+ python_domodule *.py
- python_moduleinto ${PN}
- python_foreach_impl python_domodule *.py
+ for i in pdb_*.py; do
+ cat > ${i/.py} <<- EOF
+ #!${EPREFIX}/bin/bash
+ ${PYTHON} -O "${EPREFIX}$(python_get_sitedir)/${PN/-/_}/${i}" \$@
+ EOF
+ dobin ${i/.py}
+ done
dobin bin/*
dodoc README
^ permalink raw reply [flat|nested] 2+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/pdb-tools: ChangeLog pdb-tools-0.1.4-r4.ebuild
@ 2013-06-04 12:45 Justin Lecher (jlec)
0 siblings, 0 replies; 2+ messages in thread
From: Justin Lecher (jlec) @ 2013-06-04 12:45 UTC (permalink / raw
To: gentoo-commits
jlec 13/06/04 12:45:21
Modified: ChangeLog pdb-tools-0.1.4-r4.ebuild
Log:
sci-chemistry/pdb-tools: Fix for correct usage of new python eclasses
(Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
Revision Changes Path
1.14 sci-chemistry/pdb-tools/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?rev=1.14&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?rev=1.14&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?r1=1.13&r2=1.14
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- ChangeLog 29 May 2013 16:20:49 -0000 1.13
+++ ChangeLog 4 Jun 2013 12:45:21 -0000 1.14
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/pdb-tools
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.13 2013/05/29 16:20:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.14 2013/06/04 12:45:21 jlec Exp $
+
+ 04 Jun 2013; Justin Lecher <jlec@gentoo.org> pdb-tools-0.1.4-r4.ebuild:
+ Fix for correct usage of new python eclasses
29 May 2013; Justin Lecher <jlec@gentoo.org> pdb-tools-0.2.1.ebuild,
pdb-tools-0.2.1-r1.ebuild:
1.3 sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild?r1=1.2&r2=1.3
Index: pdb-tools-0.1.4-r4.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- pdb-tools-0.1.4-r4.ebuild 16 Apr 2013 08:57:43 -0000 1.2
+++ pdb-tools-0.1.4-r4.ebuild 4 Jun 2013 12:45:21 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild,v 1.2 2013/04/16 08:57:43 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild,v 1.3 2013/06/04 12:45:21 jlec Exp $
EAPI=5
@@ -17,8 +17,11 @@
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
-RDEPEND="sci-chemistry/dssp"
-DEPEND=""
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="${PYTHON_DEPS}
+ sci-chemistry/dssp"
+DEPEND="${PYTHON_DEPS}"
S="${WORKDIR}"/${PN}_${PV}
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