[gentoo-commits] gentoo-x86 commit in sci-biology/meme: ChangeLog meme-4.8.1-r2.ebuild meme-4.8.1-r1.ebuild meme-4.8.1.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/meme: ChangeLog meme-4.8.1-r2.ebuild meme-4.8.1-r1.ebuild meme-4.8.1.ebuild

[Justin Lecher (jlec)]

jlec        13/03/01 12:43:55

  Modified:             ChangeLog
  Added:                meme-4.8.1-r2.ebuild
  Removed:              meme-4.8.1-r1.ebuild meme-4.8.1.ebuild
  Log:
  sci-biology/meme: Rename all binaries to meme-*; should fix all collisions in future, #458208; drop old
  
  (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)

Revision  Changes    Path
1.24                 sci-biology/meme/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?rev=1.24&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?rev=1.24&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?r1=1.23&r2=1.24

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v
retrieving revision 1.23
retrieving revision 1.24
diff -u -r1.23 -r1.24
--- ChangeLog	1 Feb 2013 14:51:24 -0000	1.23
+++ ChangeLog	1 Mar 2013 12:43:54 -0000	1.24
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/meme
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.23 2013/02/01 14:51:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.24 2013/03/01 12:43:54 jlec Exp $
+
+*meme-4.8.1-r2 (01 Mar 2013)
+
+  01 Mar 2013; Justin Lecher <jlec@gentoo.org> -meme-4.8.1.ebuild,
+  -meme-4.8.1-r1.ebuild, +meme-4.8.1-r2.ebuild:
+  Rename all binaries to meme-*; should fix all collisions in future, #458208;
+  drop old
 
 *meme-4.8.1-r1 (01 Feb 2013)
 



1.1                  sci-biology/meme/meme-4.8.1-r2.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/meme-4.8.1-r2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/meme-4.8.1-r2.ebuild?rev=1.1&content-type=text/plain

Index: meme-4.8.1-r2.ebuild
===================================================================
## Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-4.8.1-r2.ebuild,v 1.1 2013/03/01 12:43:54 jlec Exp $

EAPI=4

PYTHON_DEPEND="2"

inherit autotools eutils python

DESCRIPTION="The MEME/MAST system - Motif discovery and search"
HOMEPAGE="http://meme.sdsc.edu/meme"
SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz"

LICENSE="meme"
SLOT="0"
KEYWORDS="amd64 x86"
IUSE="debug examples mpi"

DEPEND="
	app-shells/tcsh
	dev-libs/libxml2:2
	dev-libs/libxslt
	mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

S="${WORKDIR}/${PN}_${PV}"

#pkg_setup() {
	# generate meme group to restrict logging to /var/log/meme
#	enewgroup meme
#	python_pkg_setup
#	python_set_active_version 2
#}

src_prepare() {
	use examples || sed -e '/SUBDIRS/s:examples::g' -i doc/Makefile.am
	sed \
		-e '/flags/s:-O3::g' \
		-e '/opt/s:-O::g' \
		-e '/debug/s:-ggdb::' \
		-e '/debug/s:-g::' \
		-e 's:CFLAGS=:CFLAGS+=:g' \
		-i configure.ac || die
	epatch \
		"${FILESDIR}"/${P}-Makefile.am.patch
	eautoreconf
}

src_configure() {
	MY_PREFIX="${ROOT}opt/meme"
	USE_DISABLE_MPI=""; if ! use mpi; then USE_DISABLE_MPI="--enable-serial"; fi
	econf \
		--sysconfdir="${EPREFIX}/etc/meme" \
		--with-logs="${ROOT}var/log/meme" \
		$(use_enable debug) \
		$USE_DISABLE_MPI
}

src_test() {
	# bug #297070
	emake -j1 test
}

src_install() {
	local i
	default

	for i in "${ED}"/usr/bin/*; do
		"${ED}"/usr/bin/{,meme-}${i} || die
	done

	echo "PATH=/opt/${PN}/bin" > 99${PN}
	doenvd 99${PN}

	# allow logging only for members of meme group
	# diropts -m 0770 -g meme -o root
	diropts -m ugo+rwxt -o root
	keepdir /var/log/meme
}

#pkg_postinst() {
#	einfo 'Log files are produced in the "/var/log/meme" directory. Users'
#	einfo 'need to be part of the meme group to use this facility.'
#}