* [gentoo-commits] gentoo-x86 commit in sci-chemistry/cyana: metadata.xml ChangeLog cyana-2.1.ebuild
@ 2010-03-07 10:07 Justin Lecher (jlec)
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher (jlec) @ 2010-03-07 10:07 UTC (permalink / raw
To: gentoo-commits
jlec 10/03/07 10:07:10
Added: metadata.xml ChangeLog cyana-2.1.ebuild
Log:
New addition for NMR assignment and structure calculation software
(Portage version: 2.2_rc65/cvs/Linux x86_64)
Revision Changes Path
1.1 sci-chemistry/cyana/metadata.xml
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/cyana/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/cyana/metadata.xml?rev=1.1&content-type=text/plain
Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<maintainer>
<email>jlec@gentoo.org</email>
</maintainer>
</pkgmetadata>
1.1 sci-chemistry/cyana/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/cyana/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/cyana/ChangeLog?rev=1.1&content-type=text/plain
Index: ChangeLog
===================================================================
# ChangeLog for sci-chemistry/cyana
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v 1.1 2010/03/07 10:07:09 jlec Exp $
*cyana-2.1 (07 Mar 2010)
07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> +files/2.1-exec.patch,
+files/2.1-typo.patch, +cyana-2.1.ebuild, +metadata.xml:
CYANA ((c) by Peter Gu"ntert) is a program for automated structure
calculation of biological macromolecules on the basis of conformational
constraints from NMR. The combination of automated NOESY cross peak
assignment, structure calculation with a fast torsion angle dynamics
algorithm, and the ease-of-use of CYANA provide for unprecedented
efficiency in NMR protein structure determination.
1.1 sci-chemistry/cyana/cyana-2.1.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild?rev=1.1&content-type=text/plain
Index: cyana-2.1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild,v 1.1 2010/03/07 10:07:09 jlec Exp $
EAPI="3"
inherit eutils fortran toolchain-funcs
# we need libg2c for gfortran # 136988
FORTRAN="ifc"
DESCRIPTION="Combined assignment and dynamics algorithm for NMR applications"
HOMEPAGE="http://www.las.jp/english/products/s08_cyana/index.html"
SRC_URI="${P}.tar.gz"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
LICENSE="as-is"
IUSE="examples"
RESTRICT="fetch"
pkg_nofetch() {
elog "Please visit"
elog "http://www.las.jp/english/products/s08_cyana/licenses.html"
elog "and get a copy of ${A}."
elog "Place it in ${DISTDIR}."
}
src_prepare() {
epatch "${FILESDIR}"/${PV}-typo.patch
epatch "${FILESDIR}"/${PV}-exec.patch
cat >> etc/config <<- EOF
VERSION=${PV}
SHELL=${EPREFIX}/bin/sh
FC=${FORTRANC}
FFLAGS=${FFLAGS}
FFLAGS2=${FFLAGS}
CC=$(tc-getCC)
FORK=g77fork.o
LDFLAGS=${LDFLAGS}
LIBS=-pthread -lpthread -liomp5
EOF
if [[ ${FORTRANC} == gfortran ]]; then
cat >> etc/config <<- EOF
DEFS=-Dgfortran
SYSTEM=gfortran
EOF
else
cat >> etc/config <<- EOF
DEFS=-Dintel
SYSTEM=intel
EOF
fi
}
src_compile() {
cd src
emake \
|| die
}
src_install() {
source etc/config
dobin cyana{job,table,filter,clean} || die
newbin src/${PN}/${PN}exe.${SYSTEM} ${PN} || die
insinto /usr/share/${PN}
doins -r lib macro help || die
use examples && doins -r demo
cat >> "${T}"/20cyana <<- EOF
CYANALIB="${EPREFIX}/usr/share/${PN}"
EOF
doenvd "${T}"/20cyana || die
}
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/cyana: metadata.xml ChangeLog cyana-2.1.ebuild
@ 2012-10-19 9:45 Justin Lecher (jlec)
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher (jlec) @ 2012-10-19 9:45 UTC (permalink / raw
To: gentoo-commits
jlec 12/10/19 09:45:27
Modified: metadata.xml ChangeLog cyana-2.1.ebuild
Log:
sci-chemistry/cyana: Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the updated fortran-2.eclass
(Portage version: 2.2.0_alpha141/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Revision Changes Path
1.2 sci-chemistry/cyana/metadata.xml
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/metadata.xml?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/metadata.xml?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/metadata.xml?r1=1.1&r2=1.2
Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/metadata.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- metadata.xml 7 Mar 2010 10:07:09 -0000 1.1
+++ metadata.xml 19 Oct 2012 09:45:27 -0000 1.2
@@ -1,8 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
- <email>jlec@gentoo.org</email>
-</maintainer>
+ <herd>sci</herd>
+ <maintainer>
+ <email>jlec@gentoo.org</email>
+ </maintainer>
</pkgmetadata>
1.12 sci-chemistry/cyana/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/ChangeLog?rev=1.12&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/ChangeLog?rev=1.12&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/ChangeLog?r1=1.11&r2=1.12
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -r1.11 -r1.12
--- ChangeLog 21 Jun 2011 16:03:46 -0000 1.11
+++ ChangeLog 19 Oct 2012 09:45:27 -0000 1.12
@@ -1,6 +1,10 @@
# ChangeLog for sci-chemistry/cyana
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v 1.11 2011/06/21 16:03:46 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v 1.12 2012/10/19 09:45:27 jlec Exp $
+
+ 19 Oct 2012; Justin Lecher <jlec@gentoo.org> cyana-2.1.ebuild, metadata.xml:
+ Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
+ updated fortran-2.eclass
21 Jun 2011; Justin Lecher <jlec@gentoo.org> cyana-2.1.ebuild:
Add dependency on virtual/fortran
1.10 sci-chemistry/cyana/cyana-2.1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild?r1=1.9&r2=1.10
Index: cyana-2.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- cyana-2.1.ebuild 21 Jun 2011 16:03:46 -0000 1.9
+++ cyana-2.1.ebuild 19 Oct 2012 09:45:27 -0000 1.10
@@ -1,8 +1,8 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild,v 1.9 2011/06/21 16:03:46 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild,v 1.10 2012/10/19 09:45:27 jlec Exp $
-EAPI="3"
+EAPI=4
inherit eutils fortran-2 toolchain-funcs
@@ -11,16 +11,14 @@
SRC_URI="${P}.tar.gz"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
LICENSE="as-is"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
RESTRICT="fetch"
# we need libg2c for gfortran # 136988
-DEPEND="
- virtual/fortran
- dev-lang/ifc"
+DEPEND="dev-lang/ifc"
RDEPEND="${DEPEND}"
pkg_nofetch() {
@@ -66,20 +64,19 @@
src_compile() {
cd src
- emake \
- || die
+ emake
}
src_install() {
- dobin cyana{job,table,filter,clean} || die
- newbin src/${PN}/${PN}exe.* ${PN} || die
+ dobin cyana{job,table,filter,clean}
+ newbin src/${PN}/${PN}exe.* ${PN}
insinto /usr/share/${PN}
- doins -r lib macro help || die
+ doins -r lib macro help
use examples && doins -r demo
cat >> "${T}"/20cyana <<- EOF
CYANALIB="${EPREFIX}/usr/share/${PN}"
EOF
- doenvd "${T}"/20cyana || die
+ doenvd "${T}"/20cyana
}
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/cyana: metadata.xml ChangeLog cyana-2.1.ebuild
@ 2013-02-08 12:14 Justin Lecher (jlec)
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher (jlec) @ 2013-02-08 12:14 UTC (permalink / raw
To: gentoo-commits
jlec 13/02/08 12:14:24
Modified: metadata.xml ChangeLog cyana-2.1.ebuild
Log:
sci-chemistry/cyana: We only support intel compiler
(Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Revision Changes Path
1.3 sci-chemistry/cyana/metadata.xml
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/metadata.xml?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/metadata.xml?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/metadata.xml?r1=1.2&r2=1.3
Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/metadata.xml,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- metadata.xml 19 Oct 2012 09:45:27 -0000 1.2
+++ metadata.xml 8 Feb 2013 12:14:24 -0000 1.3
@@ -1,8 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci</herd>
- <maintainer>
- <email>jlec@gentoo.org</email>
- </maintainer>
+ <herd>sci</herd>
+ <maintainer>
+ <email>jlec@gentoo.org</email>
+ </maintainer>
</pkgmetadata>
1.13 sci-chemistry/cyana/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/ChangeLog?rev=1.13&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/ChangeLog?rev=1.13&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/ChangeLog?r1=1.12&r2=1.13
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -r1.12 -r1.13
--- ChangeLog 19 Oct 2012 09:45:27 -0000 1.12
+++ ChangeLog 8 Feb 2013 12:14:24 -0000 1.13
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/cyana
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v 1.12 2012/10/19 09:45:27 jlec Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v 1.13 2013/02/08 12:14:24 jlec Exp $
+
+ 08 Feb 2013; Justin Lecher <jlec@gentoo.org> cyana-2.1.ebuild, metadata.xml:
+ We only support intel compiler
19 Oct 2012; Justin Lecher <jlec@gentoo.org> cyana-2.1.ebuild, metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
1.11 sci-chemistry/cyana/cyana-2.1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild?rev=1.11&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild?rev=1.11&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild?r1=1.10&r2=1.11
Index: cyana-2.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -r1.10 -r1.11
--- cyana-2.1.ebuild 19 Oct 2012 09:45:27 -0000 1.10
+++ cyana-2.1.ebuild 8 Feb 2013 12:14:24 -0000 1.11
@@ -1,6 +1,6 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild,v 1.10 2012/10/19 09:45:27 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/cyana-2.1.ebuild,v 1.11 2013/02/08 12:14:24 jlec Exp $
EAPI=4
@@ -47,19 +47,9 @@
FORK=g77fork.o
LDFLAGS=${LDFLAGS} -reentrancy threaded -openmp
LIBS=
+ DEFS=-Dintel
+ SYSTEM=intel
EOF
-
- if [[ $(tc-getFC) =~ gfortran ]]; then
- cat >> etc/config <<- EOF
- DEFS=-Dgfortran
- SYSTEM=gfortran
- EOF
- else
- cat >> etc/config <<- EOF
- DEFS=-Dintel
- SYSTEM=intel
- EOF
- fi
}
src_compile() {
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