* [gentoo-commits] gentoo-x86 commit in sci-chemistry/coot: ChangeLog coot-0.7_pre4266.ebuild
@ 2012-07-11 20:38 Justin Lecher (jlec)
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From: Justin Lecher (jlec) @ 2012-07-11 20:38 UTC (permalink / raw
To: gentoo-commits
jlec 12/07/11 20:38:49
Modified: ChangeLog
Added: coot-0.7_pre4266.ebuild
Log:
sci-chemistry/coot: Version Bump, fixes compilation with gcc-4.7, #425836
(Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
Revision Changes Path
1.53 sci-chemistry/coot/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/coot/ChangeLog?rev=1.53&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/coot/ChangeLog?rev=1.53&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/coot/ChangeLog?r1=1.52&r2=1.53
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v
retrieving revision 1.52
retrieving revision 1.53
diff -u -r1.52 -r1.53
--- ChangeLog 7 Mar 2012 19:33:39 -0000 1.52
+++ ChangeLog 11 Jul 2012 20:38:49 -0000 1.53
@@ -1,6 +1,14 @@
# ChangeLog for sci-chemistry/coot
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.52 2012/03/07 19:33:39 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.53 2012/07/11 20:38:49 jlec Exp $
+
+*coot-0.7_pre4266 (11 Jul 2012)
+
+ 11 Jul 2012; Justin Lecher <jlec@gentoo.org> +coot-0.7_pre4266.ebuild,
+ +files/coot-0.7_pre4266-clipper-config.patch,
+ +files/coot-0.7_pre4266-goocanvas.patch,
+ +files/coot-0.7_pre4266-mmdb-config.patch, +files/coot-0.7_pre4266-ssm.patch:
+ Version Bump, fixes compilation with gcc-4.7, #425836
07 Mar 2012; Justin Lecher <jlec@gentoo.org> coot-0.6.2.ebuild,
coot-0.6.2-r1.ebuild, coot-0.7_pre4040.ebuild:
1.1 sci-chemistry/coot/coot-0.7_pre4266.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/coot/coot-0.7_pre4266.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/coot/coot-0.7_pre4266.ebuild?rev=1.1&content-type=text/plain
Index: coot-0.7_pre4266.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.7_pre4266.ebuild,v 1.1 2012/07/11 20:38:49 jlec Exp $
EAPI=4
PYTHON_DEPEND="2"
AUTOTOOLS_AUTORECONF="true"
inherit autotools-utils python toolchain-funcs versionator
MY_S2_PV=$(replace_version_separator 2 - ${PV})
MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
MY_S_P=${MY_S2_P}-${PR/r/revision-}
MY_PV=${PV}
MY_P=${PN}-${MY_PV}
DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
HOMEPAGE="http://www.biop.ox.ac.uk/coot/"
SRC_URI="
http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
SLOT="0"
LICENSE="GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="+openmp static-libs test"
AUTOTOOLS_IN_SOURCE_BUILD=1
SCIDEPS="
>=sci-libs/ccp4-libs-6.1
>=sci-libs/clipper-20090520
>=sci-libs/coot-data-2
>=sci-libs/gsl-1.3
>=sci-libs/mmdb-1.23
sci-libs/ssm
<sci-libs/monomer-db-1
sci-chemistry/reduce
<sci-chemistry/refmac-5.6
sci-chemistry/probe"
XDEPS="
gnome-base/libgnomecanvas
gnome-base/librsvg:2
media-libs/libpng
media-libs/freeglut
x11-libs/gtk+:2
x11-libs/goocanvas:0
x11-libs/gtkglext"
SCHEMEDEPS="
dev-scheme/net-http
dev-scheme/guile-gui
>=dev-scheme/guile-lib-0.1.6
dev-scheme/guile-www
>=x11-libs/guile-gtk-2.1"
RDEPEND="
${SCIDEPS}
${XDEPS}
${SCHEMEDEPS}
dev-python/pygtk:2
>=dev-libs/gmp-4.2.2-r2
>=net-misc/curl-7.19.6
net-dns/libidn"
DEPEND="${RDEPEND}
>=sys-devel/libtool-2.4-r2
dev-lang/swig
sys-devel/bc
test? ( dev-scheme/greg )"
pkg_setup() {
if use openmp; then
tc-has-openmp || die "Please use an OPENMP capable compiler"
fi
python_set_active_version 2
python_pkg_setup
}
PATCHES=(
"${FILESDIR}"/${P}-clipper-config.patch
"${FILESDIR}"/${P}-goocanvas.patch
"${FILESDIR}"/${P}-mmdb-config.patch
"${FILESDIR}"/${P}-ssm.patch
)
src_prepare() {
sed \
-e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
-i configure.in || die
autotools-utils_src_prepare
cat >> src/svn-revision.cc <<- EOF
extern "C" {
int svn_revision() {
return ${ESVN_WC_REVISION:-0};
}
}
EOF
}
src_configure() {
# All the --with's are used to activate various parts.
# Yes, this is broken behavior.
local myeconfargs=(
--includedir='${prefix}/include/coot'
--with-goocanvas-prefix="${EPREFIX}/usr"
--with-guile
--with-python="${EPREFIX}/usr"
--with-guile-gtk
--with-gtk2
--with-pygtk
$(use_enable openmp)
)
autotools-utils_src_configure
}
src_compile() {
autotools-utils_src_compile
python_convert_shebangs $(python_get_version) "${S}"/src/coot_gtk2.py
cp "${S}"/src/coot_gtk2.py python/coot.py || die
}
src_test() {
source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
mkdir "${T}"/coot_test
export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
export COOT_SCHEME_DIR="${S}/scheme/"
export COOT_RESOURCES_FILE="${S}/cootrc"
export COOT_PIXMAPS_DIR="${S}/pixmaps/"
export COOT_DATA_DIR="${S}/"
export COOT_PYTHON_DIR="${S}/python/"
export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
export PYTHONHOME="${EPREFIX}"/usr/
export CCP4_SCR="${T}"/coot_test/
export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
export SYMINFO="${S}/syminfo.lib"
export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data
cat > command-line-greg.scm <<- EOF
(use-modules (ice-9 greg))
(set! greg-tools (list "greg-tests"))
(set! greg-debug #t)
(set! greg-verbose 5)
(let ((r (greg-test-run)))
(if r
(coot-real-exit 0)
(coot-real-exit 1)))
EOF
einfo "Running test with following paths ..."
einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
einfo "COOT_DATA_DIR $COOT_DATA_DIR"
einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
einfo "PYTHONPATH $PYTHONPATH"
einfo "PYTHONHOME $PYTHONHOME"
einfo "CCP4_SCR ${CCP4_SCR}"
einfo "CLIBD_MON ${CLIBD_MON}"
einfo "SYMINFO ${SYMINFO}"
"${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
"${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
}
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2012-07-11 20:38 [gentoo-commits] gentoo-x86 commit in sci-chemistry/coot: ChangeLog coot-0.7_pre4266.ebuild Justin Lecher (jlec)
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