[gentoo-commits] gentoo-x86 commit in sci-biology/vaal: ChangeLog vaal-42179.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/vaal: ChangeLog vaal-42179.ebuild

[Justin Lecher (jlec)]

jlec        12/06/25 19:09:20

  Modified:             ChangeLog
  Added:                vaal-42179.ebuild
  Log:
  sci-biology/vaal: Version Bump
  
  (Portage version: 2.2.0_alpha112/cvs/Linux x86_64)

Revision  Changes    Path
1.10                 sci-biology/vaal/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?r1=1.9&r2=1.10

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- ChangeLog	25 Jun 2012 18:50:32 -0000	1.9
+++ ChangeLog	25 Jun 2012 19:09:19 -0000	1.10
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/vaal
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.9 2012/06/25 18:50:32 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.10 2012/06/25 19:09:19 jlec Exp $
+
+*vaal-42179 (25 Jun 2012)
+
+  25 Jun 2012; Justin Lecher <jlec@gentoo.org> +vaal-42179.ebuild:
+  Version Bump
 
   25 Jun 2012; Justin Lecher <jlec@gentoo.org> -vaal-1.2-r1.ebuild,
   vaal-1.6.ebuild, files/vaal-1.6-respect-flags.patch:



1.1                  sci-biology/vaal/vaal-42179.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-42179.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-42179.ebuild?rev=1.1&content-type=text/plain

Index: vaal-42179.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-42179.ebuild,v 1.1 2012/06/25 19:09:19 jlec Exp $

EAPI=4

AUTOTOOLS_AUTORECONF=yes

inherit autotools-utils

DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"
SRC_URI="
	ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz
	ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"

LICENSE="Whitehead-MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="openmp"

DEPEND=">=dev-libs/boost-1.41.0-r3"
RDEPEND="${DEPEND}"

DOCS=( "${DISTDIR}/VAAL_manual.doc" )

src_prepare() {
	sed \
		-e '/COPYING/d' \
		-i src/Makefile.am || die

	sed \
		-e 's:-ggdb3::g' \
		-e '/AC_OPENMP_CEHCK/d' \
		-i configure.ac || die
	autotools-utils_src_prepare
}

src_configure(){
	local myeconfargs=( $(use_enable openmp) )
	autotools-utils_src_configure
}