[gentoo-commits] gentoo-x86 commit in sci-biology/bowtie/files: bowtie-0.12.8-gcc-47.patch

[gentoo-commits] gentoo-x86 commit in sci-biology/bowtie/files: bowtie-0.12.8-gcc-47.patch

[Justin Lecher (jlec)]

jlec        12/06/19 11:34:11

  Added:                bowtie-0.12.8-gcc-47.patch
  Log:
  sci-biology/bowtie: Version Bump, Fix compilation with gcc-4.7, #421919
  
  (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-biology/bowtie/files/bowtie-0.12.8-gcc-47.patch

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bowtie/files/bowtie-0.12.8-gcc-47.patch?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bowtie/files/bowtie-0.12.8-gcc-47.patch?rev=1.1&content-type=text/plain

Index: bowtie-0.12.8-gcc-47.patch
===================================================================
 alphabet.h |   24 ++++++++++++------------
 1 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/alphabet.h b/alphabet.h
index b464ddf..08d0281 100644
--- a/alphabet.h
+++ b/alphabet.h
@@ -38,6 +38,18 @@ static inline TStr reverseComplement(const TStr& s, bool color) {
 	return s_rc;
 }
 
+/// Reverse a string in-place
+template <typename TStr>
+static inline void reverseInPlace(TStr& s) {
+	typedef typename Value<TStr>::Type TVal;
+	size_t len = length(s);
+	for(size_t i = 0; i < (len>>1); i++) {
+		TVal tmp = s[i];
+		s[i] = s[len-i-1];
+		s[len-i-1] = tmp;
+	}
+}
+
 /**
  * Reverse-complement s in-place.  Ns go to Ns.
  */
@@ -69,18 +81,6 @@ static inline void reverseComplementInPlace(TStr& s, bool color) {
 	}
 }
 
-/// Reverse a string in-place
-template <typename TStr>
-static inline void reverseInPlace(TStr& s) {
-	typedef typename Value<TStr>::Type TVal;
-	size_t len = length(s);
-	for(size_t i = 0; i < (len>>1); i++) {
-		TVal tmp = s[i];
-		s[i] = s[len-i-1];
-		s[len-i-1] = tmp;
-	}
-}
-
 /**
  * Return the reverse-complement of s.
  */