[gentoo-commits] gentoo-x86 commit in sci-biology/GBrowse: GBrowse-2.48.ebuild ChangeLog GBrowse-2.39.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/GBrowse: GBrowse-2.48.ebuild ChangeLog GBrowse-2.39.ebuild

[Andrey Kislyuk (weaver)]

weaver      12/02/27 15:55:41

  Modified:             ChangeLog
  Added:                GBrowse-2.48.ebuild
  Removed:              GBrowse-2.39.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.0_alpha74/cvs/Linux x86_64)

Revision  Changes    Path
1.4                  sci-biology/GBrowse/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?r1=1.3&r2=1.4

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- ChangeLog	2 Jan 2012 21:19:46 -0000	1.3
+++ ChangeLog	27 Feb 2012 15:55:41 -0000	1.4
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/GBrowse
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.3 2012/01/02 21:19:46 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.4 2012/02/27 15:55:41 weaver Exp $
+
+*GBrowse-2.48 (27 Feb 2012)
+
+  27 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> -GBrowse-2.39.ebuild,
+  +GBrowse-2.48.ebuild:
+  Version bump
 
 *GBrowse-2.44-r1 (02 Jan 2012)
 



1.1                  sci-biology/GBrowse/GBrowse-2.48.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48.ebuild?rev=1.1&content-type=text/plain

Index: GBrowse-2.48.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48.ebuild,v 1.1 2012/02/27 15:55:41 weaver Exp $

EAPI=4

MODULE_AUTHOR=LDS
inherit perl-module webapp

DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser"
HOMEPAGE="http://gmod.org/wiki/GBrowse"
KEYWORDS="~amd64 ~x86"
IUSE="-minimal mysql postgres +sqlite"

SLOT="0"
WEBAPP_MANUAL_SLOT="yes"

CDEPEND="!<sci-biology/GBrowse-2.44-r1
	>=sci-biology/bioperl-1.6.9
	>=dev-perl/Bio-Graphics-2.09
	>=dev-perl/GD-2.07
	>=dev-perl/CGI-Session-4.02
	dev-perl/IO-String
	dev-perl/JSON
	dev-perl/libwww-perl
	dev-perl/Statistics-Descriptive
	!minimal? (
		dev-perl/Bio-Das
		>=dev-perl/Bio-SamTools-1.20
		dev-perl/Crypt-SSLeay
		dev-perl/DB_File-Lock
		dev-perl/DBI
		mysql? ( dev-perl/DBD-mysql )
		postgres? ( dev-perl/DBD-Pg )
		sqlite? ( dev-perl/DBD-SQLite )
		dev-perl/FCGI
		dev-perl/File-NFSLock
		dev-perl/GD-SVG
		dev-perl/Net-OpenID-Consumer
		dev-perl/Net-SMTP-SSL
	)"
#		>=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile
DEPEND="virtual/perl-Module-Build
	dev-perl/Capture-Tiny
	${CDEPEND}"
RDEPEND="${CDEPEND}"

PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch )

src_configure() {
	webapp_src_preinst

#	myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse"
	myconf="--conf=/etc/gbrowse2"
	myconf="${myconf} --htdocs=${MY_HTDOCSDIR}"
	myconf="${myconf} --cgibin=${MY_CGIBINDIR}"
	myconf="${myconf} --tmp=/var/tmp/gbrowse2"
	myconf="${myconf} --persistent=/var/db/gbrowse2"
	myconf="${myconf} --databases=/var/db/gbrowse2/databases"
	myconf="${myconf} --installconf=no"
	myconf="${myconf} --installetc=no"
	perl-module_src_configure
}

src_install() {
	dodir /var/tmp/gbrowse2
	dodir /var/db/gbrowse2/sessions
	dodir /var/db/gbrowse2/userdata
	webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2
	perl-module_src_install
	webapp_src_install
}