* [gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: ChangeLog Bio-SamTools-1.300.0.ebuild Bio-SamTools-1.290.0.ebuild Bio-SamTools-1.310.0.ebuild
@ 2011-09-25 11:52 Torsten Veller (tove)
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From: Torsten Veller (tove) @ 2011-09-25 11:52 UTC (permalink / raw
To: gentoo-commits
tove 11/09/25 11:52:27
Modified: ChangeLog Bio-SamTools-1.300.0.ebuild
Bio-SamTools-1.290.0.ebuild
Added: Bio-SamTools-1.310.0.ebuild
Log:
Version bump. Fix R/DEPEND.
(Portage version: 2.2.0_alpha59/cvs/Linux x86_64)
Revision Changes Path
1.5 dev-perl/Bio-SamTools/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.4&r2=1.5
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- ChangeLog 5 Sep 2011 18:07:13 -0000 1.4
+++ ChangeLog 25 Sep 2011 11:52:27 -0000 1.5
@@ -1,6 +1,12 @@
# ChangeLog for dev-perl/Bio-SamTools
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.4 2011/09/05 18:07:13 robbat2 Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.5 2011/09/25 11:52:27 tove Exp $
+
+*Bio-SamTools-1.310.0 (25 Sep 2011)
+
+ 25 Sep 2011; Torsten Veller <tove@gentoo.org> Bio-SamTools-1.290.0.ebuild,
+ Bio-SamTools-1.300.0.ebuild, +Bio-SamTools-1.310.0.ebuild:
+ Version bump. Fix R/DEPEND.
*Bio-SamTools-1.300.0 (05 Sep 2011)
1.2 dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild?r1=1.1&r2=1.2
Index: Bio-SamTools-1.300.0.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- Bio-SamTools-1.300.0.ebuild 5 Sep 2011 18:07:13 -0000 1.1
+++ Bio-SamTools-1.300.0.ebuild 25 Sep 2011 11:52:27 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild,v 1.1 2011/09/05 18:07:13 robbat2 Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild,v 1.2 2011/09/25 11:52:27 tove Exp $
EAPI=4
@@ -14,9 +14,9 @@
KEYWORDS="~amd64 ~x86"
IUSE=""
-DEPEND="sci-biology/bioperl
+RDEPEND="sci-biology/bioperl
sci-biology/samtools"
-RDEPEND="${DEPEND}
+DEPEND="${RDEPEND}
virtual/perl-ExtUtils-CBuilder
virtual/perl-Module-Build
"
1.2 dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild?r1=1.1&r2=1.2
Index: Bio-SamTools-1.290.0.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- Bio-SamTools-1.290.0.ebuild 1 Sep 2011 13:02:36 -0000 1.1
+++ Bio-SamTools-1.290.0.ebuild 25 Sep 2011 11:52:27 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild,v 1.1 2011/09/01 13:02:36 tove Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild,v 1.2 2011/09/25 11:52:27 tove Exp $
EAPI=4
@@ -14,9 +14,9 @@
KEYWORDS="~amd64 ~x86"
IUSE=""
-DEPEND="sci-biology/bioperl
+RDEPEND="sci-biology/bioperl
sci-biology/samtools"
-RDEPEND="${DEPEND}
+DEPEND="${RDEPEND}
virtual/perl-ExtUtils-CBuilder
virtual/perl-Module-Build
"
1.1 dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild?rev=1.1&content-type=text/plain
Index: Bio-SamTools-1.310.0.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild,v 1.1 2011/09/25 11:52:27 tove Exp $
EAPI=4
MODULE_AUTHOR=LDS
MODULE_VERSION=1.31
inherit perl-module
DESCRIPTION="Read SAM/BAM database files"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
RDEPEND="sci-biology/bioperl
>=sci-biology/samtools-0.1.16"
DEPEND="${RDEPEND}
virtual/perl-ExtUtils-CBuilder
virtual/perl-Module-Build
"
SRC_TEST=do
src_prepare() {
sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \
-e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die
sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \
-e 's|#include "khash.h"|#include "bam/khash.h"|' \
-e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die
perl-module_src_prepare
}
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2011-09-25 11:52 [gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: ChangeLog Bio-SamTools-1.300.0.ebuild Bio-SamTools-1.290.0.ebuild Bio-SamTools-1.310.0.ebuild Torsten Veller (tove)
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