[gentoo-commits] gentoo-x86 commit in sci-chemistry/pdb-tools: metadata.xml ChangeLog pdb-tools-0.1.4-r3.ebuild pdb-tools-0.1.4-r2.ebuild

[gentoo-commits] gentoo-x86 commit in sci-chemistry/pdb-tools: metadata.xml ChangeLog pdb-tools-0.1.4-r3.ebuild pdb-tools-0.1.4-r2.ebuild

[Justin Lecher (jlec)]

jlec        11/08/29 14:05:37

  Modified:             metadata.xml ChangeLog
  Added:                pdb-tools-0.1.4-r3.ebuild
  Removed:              pdb-tools-0.1.4-r2.ebuild
  Log:
  Fix doubled entries in wrapper scripts
  
  (Portage version: 2.2.0_alpha51/cvs/Linux x86_64)

Revision  Changes    Path
1.2                  sci-chemistry/pdb-tools/metadata.xml

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/metadata.xml?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/metadata.xml?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/metadata.xml?r1=1.1&r2=1.2

Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/metadata.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- metadata.xml	28 Oct 2010 15:48:14 -0000	1.1
+++ metadata.xml	29 Aug 2011 14:05:36 -0000	1.2
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-chemistry</herd>
-<maintainer>
-  <email>jlec@gentoo.org</email>
-</maintainer>
+	<herd>sci-chemistry</herd>
+	<maintainer>
+		<email>jlec@gentoo.org</email>
+	</maintainer>
 </pkgmetadata>



1.7                  sci-chemistry/pdb-tools/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?rev=1.7&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?rev=1.7&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?r1=1.6&r2=1.7

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- ChangeLog	21 Jun 2011 16:00:15 -0000	1.6
+++ ChangeLog	29 Aug 2011 14:05:36 -0000	1.7
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/pdb-tools
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.6 2011/06/21 16:00:15 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.7 2011/08/29 14:05:36 jlec Exp $
+
+*pdb-tools-0.1.4-r3 (29 Aug 2011)
+
+  29 Aug 2011; Justin Lecher <jlec@gentoo.org> -pdb-tools-0.1.4-r2.ebuild,
+  +pdb-tools-0.1.4-r3.ebuild, metadata.xml:
+  Fix doubled entries in wrapper scripts
 
   21 Jun 2011; Justin Lecher <jlec@gentoo.org> pdb-tools-0.1.4-r2.ebuild:
   Add dependency on virtual/fortran



1.1                  sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild?rev=1.1&content-type=text/plain

Index: pdb-tools-0.1.4-r3.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild,v 1.1 2011/08/29 14:05:36 jlec Exp $

EAPI=3

PYTHON_DEPEND="2"
SUPPORT_PYTHON_ABIS="1"
RESTRICT_PYTHON_ABIS="3.*"

inherit fortran-2 python toolchain-funcs

DESCRIPTION="Tools for manipulating and doing calculations on wwPDB macromolecule structure files"
HOMEPAGE="http://code.google.com/p/pdb-tools/"
SRC_URI="http://${PN}.googlecode.com/files/${PN}_${PV}.tar.gz"

SLOT="0"
LICENSE="GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""

RDEPEND="
	sci-chemistry/dssp
	virtual/fortran"
DEPEND=""

S="${WORKDIR}"/${PN}_${PV}

src_prepare() {
	sed "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" -i pdb_sasa.py || die
	sed "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" -i pdb_satk.py || die
}

src_compile() {
	mkdir bin
	cd satk
	for i in *.f; do
		einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}"
		$(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die
		$(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die
		sed "s:${i/.f}.out:${i/.f}:g" -i ../pdb_satk.py || die
	done
}

src_install() {
	insinto /usr/share/${PN}
	doins -r pdb_data/peptides || die
	rm -rf pdb_data/peptides || die

	installation() {
		insinto $(python_get_sitedir)
		doins -r helper pdb_data || die

		insinto $(python_get_sitedir)/${PN}
		doins *.py || die

		for i in pdb_*.py; do
			cat > ${i/.py} <<- EOF
			#!${EPREFIX}/bin/bash
			$(PYTHON) -O "${EPREFIX}$(python_get_sitedir)/${PN}/${i}" \$@
			EOF
			dobin ${i/.py}
		done
	}

	python_execute_function installation

	dobin bin/* || die
	dodoc README || die
}

pkg_postinst() {
	python_mod_optimize ${PN} helper pdb_data
}

pkg_postrm() {
	python_mod_cleanup ${PN} helper pdb_data
}