* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.4-r1.ebuild
@ 2011-04-04 21:26 Alexey Shvetsov (alexxy)
0 siblings, 0 replies; 5+ messages in thread
From: Alexey Shvetsov (alexxy) @ 2011-04-04 21:26 UTC (permalink / raw
To: gentoo-commits
alexxy 11/04/04 21:26:20
Modified: ChangeLog
Added: gromacs-4.5.4-r1.ebuild
Log:
[sci-chemistry/gromacs] Fix QA execstack bug #361687
(Portage version: 2.2.0_alpha29/cvs/Linux x86_64)
Revision Changes Path
1.80 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.80&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.80&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.79&r2=1.80
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.79
retrieving revision 1.80
diff -u -r1.79 -r1.80
--- ChangeLog 4 Apr 2011 18:56:42 -0000 1.79
+++ ChangeLog 4 Apr 2011 21:26:20 -0000 1.80
@@ -1,6 +1,11 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.79 2011/04/04 18:56:42 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.80 2011/04/04 21:26:20 alexxy Exp $
+
+*gromacs-4.5.4-r1 (04 Apr 2011)
+
+ 04 Apr 2011; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.5.4-r1.ebuild:
+ Fix QA execstack bug #361687
04 Apr 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.0.7-r5.ebuild,
-gromacs-4.5.3.ebuild, -gromacs-4.5.3-r3.ebuild:
1.1 sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.1&content-type=text/plain
Index: gromacs-4.5.4-r1.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.1 2011/04/04 21:26:20 alexxy Exp $
EAPI="4"
LIBTOOLIZE="true"
TEST_PV="4.0.4"
MANUAL_PV="4.5.4"
inherit autotools-utils bash-completion flag-o-matic multilib toolchain-funcs
SRC_URI="test? ( ftp://ftp.gromacs.org/pub/tests/gmxtest-${TEST_PV}.tgz )
doc? ( ftp://ftp.gromacs.org/pub/manual/manual-${MANUAL_PV}.pdf -> gromacs-manual-${MANUAL_PV}.pdf )"
if [ "${PV%9999}" != "${PV}" ]; then
EGIT_REPO_URI="git://git.gromacs.org/gromacs"
EGIT_BRANCH="release-4-5-patches"
inherit git
else
SRC_URI="${SRC_URI} ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz"
fi
SRC_URI="${SRC_URI}
http://dev.gentoo.org/~alexxy/gromacs/0001-Make-stack-non-executable-for-GAS-assembly.patch.gz
http://dev.gentoo.org/~alexxy/gromacs/0002-Make-stack-non-executable-for-ATT-assembly.patch.gz
"
DESCRIPTION="The ultimate molecular dynamics simulation package"
HOMEPAGE="http://www.gromacs.org/"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="X altivec blas dmalloc doc -double-precision +fftw fkernels +gsl lapack
mpi +single-precision sse2 static-libs test +threads +xml zsh-completion"
REQUIRED_USE="fkernels? ( !threads )"
CDEPEND="
X? ( x11-libs/libX11
x11-libs/libSM
x11-libs/libICE )
dmalloc? ( dev-libs/dmalloc )
blas? ( virtual/blas )
fftw? ( sci-libs/fftw:3.0 )
gsl? ( sci-libs/gsl )
lapack? ( virtual/lapack )
mpi? ( virtual/mpi )
xml? ( dev-libs/libxml2:2 )"
DEPEND="${CDEPEND}
dev-util/pkgconfig"
RDEPEND="${CDEPEND}
app-shells/tcsh"
RESTRICT="test"
src_prepare() {
if use mpi && use threads; then
elog "mdrun uses only threads OR mpi, and gromacs favours the"
elog "use of mpi over threads, so a mpi-version of mdrun will"
elog "be compiled. If you want to run mdrun on shared memory"
elog "machines only, you can safely disable mpi"
fi
# Add patches for non-exec stack
epatch "${WORKDIR}/0001-Make-stack-non-executable-for-GAS-assembly.patch"
epatch "${WORKDIR}/0002-Make-stack-non-executable-for-ATT-assembly.patch"
autotools-utils_src_prepare || die
eautoreconf || die
GMX_DIRS=""
use single-precision && GMX_DIRS+=" float"
use double-precision && GMX_DIRS+=" double"
#if neither single-precision nor double-precision is enabled
#build at least default (single)
[ -z "$GMX_DIRS" ] && GMX_DIRS+=" float"
for x in ${GMX_DIRS}; do
mkdir -p "${WORKDIR}/${P}_${x}" || die
use test && cp -r "${WORKDIR}"/gmxtest "${WORKDIR}/${P}_${x}"
done
}
src_configure() {
#from gromacs configure
if ! use fftw; then
ewarn "WARNING: The built-in FFTPACK routines are slow."
ewarn "Are you sure you don\'t want to use FFTW?"
ewarn "It is free and much faster..."
fi
if [[ $(gcc-version) == "4.1" ]]; then
eerror "gcc 4.1 is not supported by gromacs"
eerror "please run test suite"
die
fi
#note for gentoo-PREFIX on apple: use --enable-apple-64bit
#fortran will gone in gromacs 5.0 anyway
#note for gentoo-PREFIX on aix, fortran (xlf) is still much faster
if use fkernels; then
ewarn "Fortran kernels are usually not faster than C kernels and assembly"
ewarn "I hope, you know what are you doing..."
fi
if use double-precision ; then
#from gromacs manual
elog
elog "For most simulations single precision is accurate enough. In some"
elog "cases double precision is required to get reasonable results:"
elog
elog "-normal mode analysis, for the conjugate gradient or l-bfgs minimization"
elog " and the calculation and diagonalization of the Hessian "
elog "-calculation of the constraint force between two large groups of atoms"
elog "-energy conservation: this can only be done without temperature coupling and"
elog " without cutoffs"
elog
fi
if use mpi ; then
elog "You have enabled mpi, only mdrun will make use of mpi, that is why"
elog "we configure/compile gromacs twice (with and without mpi) and only"
elog "install mdrun with mpi support. In addtion you will get libgmx and"
elog "libmd with and without mpi support."
fi
# if we need external blas or lapack
use blas && export LIBS+=" $(pkg-config blas --libs)"
use lapack && export LIBS+=" $(pkg-config lapack --libs)"
local sseflag="x86-64-sse"
use x86 && sseflag="ia32-sse"
#missing flag in autotools (bug #339837)
use sse2 && append-flags -msse2
for x in ${GMX_DIRS}; do
#if we build single and double - double is suffixed
use double-precision && use single-precision && \
[ "${x}" = "double" ] && suffix="_d"
myeconfargs=(
--bindir="${EPREFIX}"/usr/bin
--docdir="${EPREFIX}"/usr/share/doc/"${PF}"
--enable-"${x}"
$(use_with dmalloc)
$(use_with fftw fft fftw3)
$(use_with gsl)
$(use_with X x)
$(use_with xml)
$(use_enable threads)
$(use_enable altivec ppc-altivec)
$(use_enable ia64 ia64-asm)
$(use_with lapack external-lapack)
$(use_with blas external-blas)
$(use_enable fkernels fortran)
--disable-bluegene
--disable-la-files
--disable-power6
--disable-ia32-sse
--disable-x86-64-sse
$(use_enable sse2 $sseflag)
)
#disable ia32-sse and x86-64-sse and enable what we really need in last line
einfo "Configuring for ${x} precision"
AUTOTOOLS_BUILD_DIR="${WORKDIR}/${P}_${x}"\
autotools-utils_src_configure --disable-mpi --program-suffix="${suffix}" \
CC="$(tc-getCC)" F77="$(tc-getFC)"
use mpi || continue
einfo "Configuring for ${x} precision with mpi"
AUTOTOOLS_BUILD_DIR="${WORKDIR}/${P}_${x}_mpi"\
autotools-utils_src_configure --enable-mpi --program-suffix="_mpi${suffix}" \
CC="$(tc-getCC)" F77="$(tc-getFC)"
done
}
src_compile() {
for x in ${GMX_DIRS}; do
einfo "Compiling for ${x} precision"
AUTOTOOLS_BUILD_DIR="${WORKDIR}/${P}_${x}"\
autotools-utils_src_compile
use mpi || continue
einfo "Compiling for ${x} precision with mpi"
AUTOTOOLS_BUILD_DIR="${WORKDIR}/${P}_${x}_mpi"\
autotools-utils_src_compile mdrun
done
}
src_test() {
for x in ${GMX_DIRS}; do
local oldpath="${PATH}"
export PATH="${WORKDIR}/${P}_${x}/src/kernel:${S}-{x}/src/tools:${PATH}"
cd "${WORKDIR}/${P}_${x}"
emake -j1 tests || die "${x} Precision test failed"
export PATH="${oldpath}"
done
}
src_install() {
for x in ${GMX_DIRS}; do
AUTOTOOLS_BUILD_DIR="${WORKDIR}/${P}_${x}" \
autotools-utils_src_install
use mpi || continue
#autotools-utils_src_install does not support args
#using autotools-utils_src_compile instead
AUTOTOOLS_BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
autotools-utils_src_compile install-mdrun DESTDIR="${D}"
#stolen from autotools-utils_src_install see comment above
local args
has static-libs ${IUSE//+} && ! use static-libs || args='none'
remove_libtool_files ${args}
done
sed -n -e '/^GMXBIN/,/^GMXDATA/p' "${ED}"/usr/bin/GMXRC.bash > "${T}/80gromacs"
echo "VMD_PLUGIN_PATH=${EPREFIX}/usr/$(get_libdir)/vmd/plugins/*/molfile/" >> "${T}/80gromacs"
doenvd "${T}/80gromacs"
rm -f "${ED}"/usr/bin/GMXRC*
dobashcompletion "${ED}"/usr/bin/completion.bash ${PN}
if use zsh-completion ; then
insinto /usr/share/zsh/site-functions
newins "${ED}"/usr/bin/completion.zsh _${PN}
fi
rm -f "${ED}"/usr/bin/completion.*
# Fix typos in a couple of files.
sed -e "s:+0f:-f:" -i "${ED}"usr/share/gromacs/tutor/gmxdemo/demo \
|| die "Failed to fixup demo script."
cd "${S}"
dodoc AUTHORS INSTALL* README*
if use doc; then
newdoc "${DISTDIR}/gromacs-manual-${MANUAL_PV}.pdf" "manual-${MANUAL_PV}.pdf"
dohtml -r "${ED}usr/share/gromacs/html/"
fi
rm -rf "${ED}usr/share/gromacs/html/"
}
pkg_postinst() {
env-update && source /etc/profile
elog
elog "Please read and cite:"
elog "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
elog "http://dx.doi.org/10.1021/ct700301q"
elog
bash-completion_pkg_postinst
elog
elog $(g_luck)
elog "For more Gromacs cool quotes (gcq) add luck to your .bashrc"
elog
elog "Gromacs can use sci-chemistry/vmd to read additional file formats"
elog
}
^ permalink raw reply [flat|nested] 5+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.4-r1.ebuild
@ 2011-04-10 5:58 Thomas Kahle (tomka)
0 siblings, 0 replies; 5+ messages in thread
From: Thomas Kahle (tomka) @ 2011-04-10 5:58 UTC (permalink / raw
To: gentoo-commits
tomka 11/04/10 05:58:32
Modified: ChangeLog gromacs-4.5.4-r1.ebuild
Log:
x86 stable per bug 357017
(Portage version: 2.1.9.45/cvs/Linux i686)
Revision Changes Path
1.81 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.81&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.81&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.80&r2=1.81
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.80
retrieving revision 1.81
diff -u -r1.80 -r1.81
--- ChangeLog 4 Apr 2011 21:26:20 -0000 1.80
+++ ChangeLog 10 Apr 2011 05:58:32 -0000 1.81
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.80 2011/04/04 21:26:20 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.81 2011/04/10 05:58:32 tomka Exp $
+
+ 10 Apr 2011; Thomas Kahle <tomka@gentoo.org> gromacs-4.5.4-r1.ebuild:
+ x86 stable per bug 357017
*gromacs-4.5.4-r1 (04 Apr 2011)
1.2 sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?r1=1.1&r2=1.2
Index: gromacs-4.5.4-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- gromacs-4.5.4-r1.ebuild 4 Apr 2011 21:26:20 -0000 1.1
+++ gromacs-4.5.4-r1.ebuild 10 Apr 2011 05:58:32 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.1 2011/04/04 21:26:20 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.2 2011/04/10 05:58:32 tomka Exp $
EAPI="4"
@@ -31,7 +31,7 @@
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~alpha ~amd64 ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~alpha ~amd64 ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux"
IUSE="X altivec blas dmalloc doc -double-precision +fftw fkernels +gsl lapack
mpi +single-precision sse2 static-libs test +threads +xml zsh-completion"
REQUIRED_USE="fkernels? ( !threads )"
^ permalink raw reply [flat|nested] 5+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.4-r1.ebuild
@ 2011-04-10 17:15 Raul Porcel (armin76)
0 siblings, 0 replies; 5+ messages in thread
From: Raul Porcel (armin76) @ 2011-04-10 17:15 UTC (permalink / raw
To: gentoo-commits
armin76 11/04/10 17:15:18
Modified: ChangeLog gromacs-4.5.4-r1.ebuild
Log:
alpha/sparc stable wrt #357017
(Portage version: 2.1.9.44/cvs/Linux ia64)
Revision Changes Path
1.83 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.83&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.83&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.82&r2=1.83
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.82
retrieving revision 1.83
diff -u -r1.82 -r1.83
--- ChangeLog 10 Apr 2011 12:23:40 -0000 1.82
+++ ChangeLog 10 Apr 2011 17:15:18 -0000 1.83
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.82 2011/04/10 12:23:40 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.83 2011/04/10 17:15:18 armin76 Exp $
+
+ 10 Apr 2011; Raúl Porcel <armin76@gentoo.org> gromacs-4.5.4-r1.ebuild:
+ alpha/sparc stable wrt #357017
10 Apr 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.0.7-r4.ebuild,
-files/gromacs-4.0.9999-docdir.patch:
1.3 sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?r1=1.2&r2=1.3
Index: gromacs-4.5.4-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- gromacs-4.5.4-r1.ebuild 10 Apr 2011 05:58:32 -0000 1.2
+++ gromacs-4.5.4-r1.ebuild 10 Apr 2011 17:15:18 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.2 2011/04/10 05:58:32 tomka Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.3 2011/04/10 17:15:18 armin76 Exp $
EAPI="4"
@@ -31,7 +31,7 @@
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~alpha ~amd64 ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="alpha ~amd64 ~ppc64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="X altivec blas dmalloc doc -double-precision +fftw fkernels +gsl lapack
mpi +single-precision sse2 static-libs test +threads +xml zsh-completion"
REQUIRED_USE="fkernels? ( !threads )"
^ permalink raw reply [flat|nested] 5+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.4-r1.ebuild
@ 2011-04-11 17:55 Christoph Mende (angelos)
0 siblings, 0 replies; 5+ messages in thread
From: Christoph Mende (angelos) @ 2011-04-11 17:55 UTC (permalink / raw
To: gentoo-commits
angelos 11/04/11 17:55:07
Modified: ChangeLog gromacs-4.5.4-r1.ebuild
Log:
Stable on amd64 wrt bug #357017
(Portage version: 2.2.0_alpha29/cvs/Linux x86_64)
Revision Changes Path
1.84 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.84&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.84&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.83&r2=1.84
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.83
retrieving revision 1.84
diff -u -r1.83 -r1.84
--- ChangeLog 10 Apr 2011 17:15:18 -0000 1.83
+++ ChangeLog 11 Apr 2011 17:55:07 -0000 1.84
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.83 2011/04/10 17:15:18 armin76 Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.84 2011/04/11 17:55:07 angelos Exp $
+
+ 11 Apr 2011; Christoph Mende <angelos@gentoo.org> gromacs-4.5.4-r1.ebuild:
+ Stable on amd64 wrt bug #357017
10 Apr 2011; Raúl Porcel <armin76@gentoo.org> gromacs-4.5.4-r1.ebuild:
alpha/sparc stable wrt #357017
1.4 sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?r1=1.3&r2=1.4
Index: gromacs-4.5.4-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- gromacs-4.5.4-r1.ebuild 10 Apr 2011 17:15:18 -0000 1.3
+++ gromacs-4.5.4-r1.ebuild 11 Apr 2011 17:55:07 -0000 1.4
@@ -1,6 +1,6 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.3 2011/04/10 17:15:18 armin76 Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.4 2011/04/11 17:55:07 angelos Exp $
EAPI="4"
@@ -31,7 +31,7 @@
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="alpha ~amd64 ~ppc64 sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="alpha amd64 ~ppc64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="X altivec blas dmalloc doc -double-precision +fftw fkernels +gsl lapack
mpi +single-precision sse2 static-libs test +threads +xml zsh-completion"
REQUIRED_USE="fkernels? ( !threads )"
^ permalink raw reply [flat|nested] 5+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.4-r1.ebuild
@ 2011-06-21 6:41 Justin Lecher (jlec)
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher (jlec) @ 2011-06-21 6:41 UTC (permalink / raw
To: gentoo-commits
jlec 11/06/21 06:41:37
Modified: ChangeLog gromacs-4.5.4-r1.ebuild
Log:
Use append-libs
(Portage version: 2.2.0_alpha41/cvs/Linux x86_64)
Revision Changes Path
1.87 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.87&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.87&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.86&r2=1.87
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.86
retrieving revision 1.87
diff -u -r1.86 -r1.87
--- ChangeLog 8 Jun 2011 16:21:41 -0000 1.86
+++ ChangeLog 21 Jun 2011 06:41:37 -0000 1.87
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.86 2011/06/08 16:21:41 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.87 2011/06/21 06:41:37 jlec Exp $
+
+ 21 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.4-r1.ebuild:
+ Use append-libs
*gromacs-4.5.4-r2 (08 Jun 2011)
1.6 sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild?r1=1.5&r2=1.6
Index: gromacs-4.5.4-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- gromacs-4.5.4-r1.ebuild 1 May 2011 16:49:59 -0000 1.5
+++ gromacs-4.5.4-r1.ebuild 21 Jun 2011 06:41:37 -0000 1.6
@@ -1,6 +1,6 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.5 2011/05/01 16:49:59 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4-r1.ebuild,v 1.6 2011/06/21 06:41:37 jlec Exp $
EAPI="4"
@@ -128,8 +128,8 @@
fi
# if we need external blas or lapack
- use blas && export LIBS+=" $(pkg-config blas --libs)"
- use lapack && export LIBS+=" $(pkg-config lapack --libs)"
+ use blas && append-libs $(pkg-config blas --libs)
+ use lapack && append-libs $(pkg-config lapack --libs)
local sseflag="x86-64-sse"
use x86 && sseflag="ia32-sse"
^ permalink raw reply [flat|nested] 5+ messages in thread
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2011-04-11 17:55 [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.4-r1.ebuild Christoph Mende (angelos)
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2011-06-21 6:41 Justin Lecher (jlec)
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