[gentoo-commits] gentoo-x86 commit in sci-biology/shrimp: shrimp-2.1.0.ebuild ChangeLog shrimp-1.2.1.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/shrimp: shrimp-2.1.0.ebuild ChangeLog shrimp-1.2.1.ebuild

[Andrey Kislyuk (weaver)]

weaver      11/02/03 00:13:49

  Modified:             ChangeLog
  Added:                shrimp-2.1.0.ebuild
  Removed:              shrimp-1.2.1.ebuild
  Log:
  Version bump, drop old
  
  (Portage version: 2.2_rc86/cvs/Linux x86_64)

Revision  Changes    Path
1.12                 sci-biology/shrimp/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/shrimp/ChangeLog?rev=1.12&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/shrimp/ChangeLog?rev=1.12&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/shrimp/ChangeLog?r1=1.11&r2=1.12

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -r1.11 -r1.12
--- ChangeLog	9 Aug 2010 18:19:28 -0000	1.11
+++ ChangeLog	3 Feb 2011 00:13:49 -0000	1.12
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/shrimp
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.11 2010/08/09 18:19:28 xarthisius Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.12 2011/02/03 00:13:49 weaver Exp $
+
+*shrimp-2.1.0 (03 Feb 2011)
+
+  03 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> -shrimp-1.2.1.ebuild,
+  +shrimp-2.1.0.ebuild:
+  Version bump, drop old
 
   09 Aug 2010; Kacper Kowalik <xarthisius@gentoo.org> shrimp-2.0.1.ebuild:
   Fix dependency on openmp.



1.1                  sci-biology/shrimp/shrimp-2.1.0.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/shrimp/shrimp-2.1.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/shrimp/shrimp-2.1.0.ebuild?rev=1.1&content-type=text/plain

Index: shrimp-2.1.0.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/shrimp-2.1.0.ebuild,v 1.1 2011/02/03 00:13:49 weaver Exp $

EAPI="2"

inherit flag-o-matic toolchain-funcs

MY_PV=${PV//./_}

DESCRIPTION="SHort Read Mapping Package"
HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/"
SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz"

LICENSE="as-is"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"

DEPEND=">=sys-devel/gcc-4.3[openmp]"
RDEPEND="${DEPEND}"  # -lgomp

S=${WORKDIR}/SHRiMP_${MY_PV}

pkg_setup() {
	tc-has-openmp || die "At least gcc-4.3 is required for openmp support."
}

src_prepare() {
	sed -i -e '1 a #include <stdint.h>' common/dag_glue.cpp || die #294811
	# respect LDFLAGS wrt 331823
	sed -i -e "s/LDFLAGS/LIBS/" -e "s/\$(LD)/& \$(LDFLAGS)/" \
		-e 's/-static//' Makefile || die
}

src_compile() {
	append-flags -fopenmp -O3 # per instructions in BUILDING
	tc-export CXX
	emake CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || die
}

src_install() {
	dobin bin/* || die
	insinto /usr/share/${PN}
	doins -r utils || die
	dodoc HISTORY README TODO SPLITTING_AND_MERGING || die
}