* [gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.55.ebuild
@ 2011-01-06 21:44 Brent Baude (ranger)
0 siblings, 0 replies; 6+ messages in thread
From: Brent Baude (ranger) @ 2011-01-06 21:44 UTC (permalink / raw
To: gentoo-commits
ranger 11/01/06 21:44:28
Modified: ChangeLog biopython-1.55.ebuild
Log:
Marking biopython-1.55 ppc for bug 341519
(Portage version: 2.1.9.25/cvs/Linux ppc64)
Revision Changes Path
1.54 sci-biology/biopython/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.54&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.54&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.53&r2=1.54
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.53
retrieving revision 1.54
diff -u -r1.53 -r1.54
--- ChangeLog 13 Dec 2010 21:29:02 -0000 1.53
+++ ChangeLog 6 Jan 2011 21:44:28 -0000 1.54
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/biopython
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.53 2010/12/13 21:29:02 arfrever Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.54 2011/01/06 21:44:28 ranger Exp $
+
+ 06 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.55.ebuild:
+ Marking biopython-1.55 ppc for bug 341519
*biopython-1.56 (13 Dec 2010)
1.5 sci-biology/biopython/biopython-1.55.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?r1=1.4&r2=1.5
Index: biopython-1.55.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- biopython-1.55.ebuild 31 Oct 2010 17:47:54 -0000 1.4
+++ biopython-1.55.ebuild 6 Jan 2011 21:44:28 -0000 1.5
@@ -1,6 +1,6 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.4 2010/10/31 17:47:54 armin76 Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.5 2011/01/06 21:44:28 ranger Exp $
EAPI="3"
PYTHON_DEPEND="2"
@@ -15,7 +15,7 @@
LICENSE="as-is"
SLOT="0"
-KEYWORDS="alpha amd64 ~ppc sparc x86"
+KEYWORDS="alpha amd64 ppc sparc x86"
IUSE="mysql postgres"
RDEPEND="dev-python/numpy
^ permalink raw reply [flat|nested] 6+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.55.ebuild
@ 2011-01-30 19:07 Arfrever Frehtes Taifersar Arahesis (arfrever)
0 siblings, 0 replies; 6+ messages in thread
From: Arfrever Frehtes Taifersar Arahesis (arfrever) @ 2011-01-30 19:07 UTC (permalink / raw
To: gentoo-commits
arfrever 11/01/30 19:07:34
Modified: ChangeLog
Removed: biopython-1.55.ebuild
Log:
Delete older ebuild.
(Portage version: 2.2.0_alpha19_p24/cvs/Linux x86_64)
Revision Changes Path
1.59 sci-biology/biopython/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.59&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.59&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.58&r2=1.59
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.58
retrieving revision 1.59
diff -u -r1.58 -r1.59
--- ChangeLog 30 Jan 2011 18:49:02 -0000 1.58
+++ ChangeLog 30 Jan 2011 19:07:34 -0000 1.59
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/biopython
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.58 2011/01/30 18:49:02 armin76 Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.59 2011/01/30 19:07:34 arfrever Exp $
+
+ 30 Jan 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
+ -biopython-1.55.ebuild:
+ Delete.
30 Jan 2011; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild,
biopython-1.56.ebuild:
^ permalink raw reply [flat|nested] 6+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.55.ebuild
@ 2010-10-31 17:47 Raul Porcel (armin76)
0 siblings, 0 replies; 6+ messages in thread
From: Raul Porcel (armin76) @ 2010-10-31 17:47 UTC (permalink / raw
To: gentoo-commits
armin76 10/10/31 17:47:54
Modified: ChangeLog biopython-1.55.ebuild
Log:
alpha/sparc stable wrt #341519
(Portage version: 2.1.8.3/cvs/Linux ia64)
Revision Changes Path
1.52 sci-biology/biopython/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.52&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.52&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.51&r2=1.52
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.51
retrieving revision 1.52
diff -u -r1.51 -r1.52
--- ChangeLog 21 Oct 2010 20:04:20 -0000 1.51
+++ ChangeLog 31 Oct 2010 17:47:54 -0000 1.52
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/biopython
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.51 2010/10/21 20:04:20 tomka Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.52 2010/10/31 17:47:54 armin76 Exp $
+
+ 31 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild:
+ alpha/sparc stable wrt #341519
21 Oct 2010; Thomas Kahle <tomka@gentoo.org> biopython-1.55.ebuild:
x86 stable per bug 341519
1.4 sci-biology/biopython/biopython-1.55.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?r1=1.3&r2=1.4
Index: biopython-1.55.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- biopython-1.55.ebuild 21 Oct 2010 20:04:20 -0000 1.3
+++ biopython-1.55.ebuild 31 Oct 2010 17:47:54 -0000 1.4
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.3 2010/10/21 20:04:20 tomka Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.4 2010/10/31 17:47:54 armin76 Exp $
EAPI="3"
PYTHON_DEPEND="2"
@@ -15,7 +15,7 @@
LICENSE="as-is"
SLOT="0"
-KEYWORDS="~alpha amd64 ~ppc ~sparc x86"
+KEYWORDS="alpha amd64 ~ppc sparc x86"
IUSE="mysql postgres"
RDEPEND="dev-python/numpy
^ permalink raw reply [flat|nested] 6+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.55.ebuild
@ 2010-10-21 20:04 Thomas Kahle (tomka)
0 siblings, 0 replies; 6+ messages in thread
From: Thomas Kahle (tomka) @ 2010-10-21 20:04 UTC (permalink / raw
To: gentoo-commits
tomka 10/10/21 20:04:20
Modified: ChangeLog biopython-1.55.ebuild
Log:
x86 stable per bug 341519
(Portage version: 2.1.9.20/cvs/Linux i686)
Revision Changes Path
1.51 sci-biology/biopython/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.51&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.51&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.50&r2=1.51
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.50
retrieving revision 1.51
diff -u -r1.50 -r1.51
--- ChangeLog 19 Oct 2010 09:32:36 -0000 1.50
+++ ChangeLog 21 Oct 2010 20:04:20 -0000 1.51
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/biopython
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.50 2010/10/19 09:32:36 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.51 2010/10/21 20:04:20 tomka Exp $
+
+ 21 Oct 2010; Thomas Kahle <tomka@gentoo.org> biopython-1.55.ebuild:
+ x86 stable per bug 341519
19 Oct 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.55.ebuild:
Stable on amd64 wrt bug #341519
1.3 sci-biology/biopython/biopython-1.55.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?r1=1.2&r2=1.3
Index: biopython-1.55.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- biopython-1.55.ebuild 19 Oct 2010 09:32:36 -0000 1.2
+++ biopython-1.55.ebuild 21 Oct 2010 20:04:20 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.2 2010/10/19 09:32:36 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.3 2010/10/21 20:04:20 tomka Exp $
EAPI="3"
PYTHON_DEPEND="2"
@@ -15,7 +15,7 @@
LICENSE="as-is"
SLOT="0"
-KEYWORDS="~alpha amd64 ~ppc ~sparc ~x86"
+KEYWORDS="~alpha amd64 ~ppc ~sparc x86"
IUSE="mysql postgres"
RDEPEND="dev-python/numpy
^ permalink raw reply [flat|nested] 6+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.55.ebuild
@ 2010-10-19 9:32 Markos Chandras (hwoarang)
0 siblings, 0 replies; 6+ messages in thread
From: Markos Chandras (hwoarang) @ 2010-10-19 9:32 UTC (permalink / raw
To: gentoo-commits
hwoarang 10/10/19 09:32:36
Modified: ChangeLog biopython-1.55.ebuild
Log:
Stable on amd64 wrt bug #341519
(Portage version: 2.2_rc97/cvs/Linux x86_64)
Revision Changes Path
1.50 sci-biology/biopython/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.50&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.50&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.49&r2=1.50
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.49
retrieving revision 1.50
diff -u -r1.49 -r1.50
--- ChangeLog 15 Oct 2010 18:50:24 -0000 1.49
+++ ChangeLog 19 Oct 2010 09:32:36 -0000 1.50
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/biopython
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.49 2010/10/15 18:50:24 ranger Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.50 2010/10/19 09:32:36 hwoarang Exp $
+
+ 19 Oct 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.55.ebuild:
+ Stable on amd64 wrt bug #341519
15 Oct 2010; Brent Baude <ranger@gentoo.org> biopython-1.54.ebuild:
stable ppc, bug 327151
1.2 sci-biology/biopython/biopython-1.55.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?r1=1.1&r2=1.2
Index: biopython-1.55.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- biopython-1.55.ebuild 17 Sep 2010 20:43:01 -0000 1.1
+++ biopython-1.55.ebuild 19 Oct 2010 09:32:36 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.1 2010/09/17 20:43:01 arfrever Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.2 2010/10/19 09:32:36 hwoarang Exp $
EAPI="3"
PYTHON_DEPEND="2"
@@ -15,7 +15,7 @@
LICENSE="as-is"
SLOT="0"
-KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86"
+KEYWORDS="~alpha amd64 ~ppc ~sparc ~x86"
IUSE="mysql postgres"
RDEPEND="dev-python/numpy
^ permalink raw reply [flat|nested] 6+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.55.ebuild
@ 2010-09-17 20:43 Arfrever Frehtes Taifersar Arahesis (arfrever)
0 siblings, 0 replies; 6+ messages in thread
From: Arfrever Frehtes Taifersar Arahesis (arfrever) @ 2010-09-17 20:43 UTC (permalink / raw
To: gentoo-commits
arfrever 10/09/17 20:43:01
Modified: ChangeLog
Added: biopython-1.55.ebuild
Log:
Version bump.
(Portage version: 2.2_rc83_p15/cvs/Linux x86_64)
Revision Changes Path
1.47 sci-biology/biopython/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.47&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.47&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.46&r2=1.47
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.46
retrieving revision 1.47
diff -u -r1.46 -r1.47
--- ChangeLog 12 Sep 2010 20:07:53 -0000 1.46
+++ ChangeLog 17 Sep 2010 20:43:00 -0000 1.47
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/biopython
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.46 2010/09/12 20:07:53 klausman Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.47 2010/09/17 20:43:00 arfrever Exp $
+
+*biopython-1.55 (17 Sep 2010)
+
+ 17 Sep 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
+ +biopython-1.55.ebuild:
+ Version bump.
12 Sep 2010; Tobias Klausmann <klausman@gentoo.org> biopython-1.54.ebuild:
Stable on alpha, bug #327151
1.1 sci-biology/biopython/biopython-1.55.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild?rev=1.1&content-type=text/plain
Index: biopython-1.55.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.1 2010/09/17 20:43:01 arfrever Exp $
EAPI="3"
PYTHON_DEPEND="2"
SUPPORT_PYTHON_ABIS="1"
RESTRICT_PYTHON_ABIS="3.*"
inherit distutils eutils
DESCRIPTION="Biopython - Python modules for computational molecular biology"
HOMEPAGE="http://www.biopython.org http://pypi.python.org/pypi/biopython"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
LICENSE="as-is"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86"
IUSE="mysql postgres"
RDEPEND="dev-python/numpy
>=dev-python/reportlab-2.0
mysql? ( dev-python/mysql-python )
postgres? ( dev-python/psycopg )"
DEPEND="${RDEPEND}
sys-devel/flex"
PYTHON_CFLAGS=("2.* + -fno-strict-aliasing")
DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1"
DOCS="CONTRIB DEPRECATED NEWS README"
PYTHON_MODNAME="Bio BioSQL"
src_prepare() {
distutils_src_prepare
epatch "${FILESDIR}/${PN}-1.51-flex.patch"
}
src_test() {
testing() {
cd Tests
PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py
}
python_execute_function --nonfatal -s testing
}
src_install() {
distutils_src_install
insinto /usr/share/doc/${PF}
doins -r Doc/* || die "Installation of documentation failed"
insinto /usr/share/${PN}
cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed"
}
^ permalink raw reply [flat|nested] 6+ messages in thread
end of thread, other threads:[~2011-01-30 19:07 UTC | newest]
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2011-01-30 19:07 Arfrever Frehtes Taifersar Arahesis (arfrever)
2010-10-31 17:47 Raul Porcel (armin76)
2010-10-21 20:04 Thomas Kahle (tomka)
2010-10-19 9:32 Markos Chandras (hwoarang)
2010-09-17 20:43 Arfrever Frehtes Taifersar Arahesis (arfrever)
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