[gentoo-commits] gentoo-x86 commit in sci-chemistry/prodecomp: metadata.xml ChangeLog prodecomp-3.0.ebuild

[gentoo-commits] gentoo-x86 commit in sci-chemistry/prodecomp: metadata.xml ChangeLog prodecomp-3.0.ebuild

[Justin Lecher (jlec)]

jlec        10/10/20 06:25:57

  Added:                metadata.xml ChangeLog prodecomp-3.0.ebuild
  Log:
  Initital addition
  
  (Portage version: 2.2_rc98/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-chemistry/prodecomp/metadata.xml

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prodecomp/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prodecomp/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
  <email>jlec@gentoo.org</email>
</maintainer>
<longdescription>
	PRODECOMP (PROjection DECOMPosition) is a software tool for 
	decomposition of 2D projections of high-dimensional NMR spectra to a set
	of components (defined in turn by one-dimensional "shapes"). 
	Simultaneous analysis of projections from one or several 
	high-dimensional experiments provide unambigous chemical shifts for 
	large spin systems. The latter can be used for backbone and side-chain 
	assignments as well as structural studies of proteins 
	(Malmodin and Billeter 2005; 2006; Staykova et al. 2008a,b).
</longdescription>
</pkgmetadata>



1.1                  sci-chemistry/prodecomp/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prodecomp/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prodecomp/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-chemistry/prodecomp
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prodecomp/ChangeLog,v 1.1 2010/10/20 06:25:57 jlec Exp $

*prodecomp-3.0 (20 Oct 2010)

  20 Oct 2010; Justin Lecher <jlec@gentoo.org> +prodecomp-3.0.ebuild,
  +metadata.xml:
  Initital addition




1.1                  sci-chemistry/prodecomp/prodecomp-3.0.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prodecomp/prodecomp-3.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prodecomp/prodecomp-3.0.ebuild?rev=1.1&content-type=text/plain

Index: prodecomp-3.0.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prodecomp/prodecomp-3.0.ebuild,v 1.1 2010/10/20 06:25:57 jlec Exp $

EAPI="3"

PYTHON_DEPEND="2"
PYTHON_USE_WITH="tk"

inherit python

DESCRIPTION="Decomposition-based analysis of NMR projections"
HOMEPAGE="http://www.lundberg.gu.se/nmr/software.php?program=PRODECOMP"
SRC_URI="mirror://gentoo/${P}.tar.bz2"

SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
LICENSE="GPL-2"
IUSE="examples"

RDEPEND="sci-libs/scipy"
DEPEND=""

S="${WORKDIR}"/NMRProjAnalys

pkg_setup() {
	python_set_active_version 2
	python_pkg_setup
}

src_install() {
	if use examples; then
		insinto /usr/share/${PN}
		doins -r ExampleData Results || die
	fi

	insinto /usr/share/doc/${PF}
	doins ProjTools/Manual.pdf || die
	rm -rf ProjTools/Manual.pdf ProdecompOutput || die

	insinto $(python_get_sitedir)
	doins -r ProjTools || die
	mv "${ED}"/$(python_get_sitedir)/{ProjTools,${PN}} || die

	cat >> "${T}"/${PN} <<- EOF
	#!/bin/bash
	$(PYTHON) -O "${EPREFIX}"/$(python_get_sitedir)/${PN}/ProjAnalys.py $@
	EOF
	dobin "${T}"/${PN} || die

	dosym ../../../../share/doc/${PF}/Manual.pdf $(python_get_sitedir)/${PN}/Manual.pdf
}