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* [gentoo-commits] gentoo-x86 commit in sci-chemistry/prekin: ChangeLog prekin-6.51.081122.ebuild prekin-6.51.081122-r1.ebuild
@ 2010-10-03  8:28 Justin Lecher (jlec)
  0 siblings, 0 replies; 2+ messages in thread
From: Justin Lecher (jlec) @ 2010-10-03  8:28 UTC (permalink / raw
  To: gentoo-commits

jlec        10/10/03 08:28:36

  Modified:             ChangeLog prekin-6.51.081122.ebuild
  Added:                prekin-6.51.081122-r1.ebuild
  Log:
  Fixes for overflows, 337779
  
  (Portage version: 2.2_rc88/cvs/Linux x86_64)

Revision  Changes    Path
1.2                  sci-chemistry/prekin/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/ChangeLog?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/ChangeLog?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/ChangeLog?r1=1.1&r2=1.2

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- ChangeLog	18 Jul 2010 08:57:09 -0000	1.1
+++ ChangeLog	3 Oct 2010 08:28:36 -0000	1.2
@@ -1,6 +1,13 @@
 # ChangeLog for sci-chemistry/prekin
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v 1.1 2010/07/18 08:57:09 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v 1.2 2010/10/03 08:28:36 jlec Exp $
+
+*prekin-6.51.081122-r1 (03 Oct 2010)
+
+  03 Oct 2010; Justin Lecher <jlec@gentoo.org>
+  +files/6.51.081122-overflow.patch, prekin-6.51.081122.ebuild,
+  +prekin-6.51.081122-r1.ebuild:
+  Fixes for overflows, 337779
 
 *prekin-6.51.081122 (18 Jul 2010)
 



1.2                  sci-chemistry/prekin/prekin-6.51.081122.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild?r1=1.1&r2=1.2

Index: prekin-6.51.081122.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- prekin-6.51.081122.ebuild	18 Jul 2010 08:57:09 -0000	1.1
+++ prekin-6.51.081122.ebuild	3 Oct 2010 08:28:36 -0000	1.2
@@ -1,6 +1,6 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild,v 1.1 2010/07/18 08:57:09 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild,v 1.2 2010/10/03 08:28:36 jlec Exp $
 
 EAPI="2"
 
@@ -26,7 +26,9 @@
 S="${WORKDIR}/${MY_P}"
 
 src_prepare() {
-	epatch "${FILESDIR}"/${PV}-Makefile.patch
+	epatch \
+		"${FILESDIR}"/${PV}-Makefile.patch \
+		"${FILESDIR}"/${PV}-overflow.patch
 	sed  \
 		-e 's:cc:$(CC):g' \
 		-e "s:GENTOOLIBDIR:$(get_libdir):g" \



1.1                  sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild?rev=1.1&content-type=text/plain

Index: prekin-6.51.081122-r1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild,v 1.1 2010/10/03 08:28:36 jlec Exp $

EAPI="2"

inherit toolchain-funcs eutils multilib

MY_P="${PN}.${PV}"

DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from PDB-format coordinate files"
HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php"
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/prekin/${MY_P}.src.tgz"

LICENSE="richardson"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
IUSE="X"

RDEPEND="
	x11-libs/libX11
	x11-libs/libXt
	X? ( 	x11-libs/openmotif )"
DEPEND="${RDEPEND}"

S="${WORKDIR}/${MY_P}"

src_prepare() {
	epatch \
		"${FILESDIR}"/${PV}-Makefile.patch \
		"${FILESDIR}"/${PV}-overflow.patch
	sed  \
		-e 's:cc:$(CC):g' \
		-e "s:GENTOOLIBDIR:$(get_libdir):g" \
		"${S}"/Makefile.linux > Makefile
}

src_compile() {
	local mytarget

	if use X; then
		mytarget="${PN}"
	else
		mytarget="nogui"
	fi

	emake \
		CC="$(tc-getCC)" \
		${mytarget} || die "make failed"
}

src_install() {
	dobin "${S}"/prekin || die "dobin failed"
}






^ permalink raw reply	[flat|nested] 2+ messages in thread

* [gentoo-commits] gentoo-x86 commit in sci-chemistry/prekin: ChangeLog prekin-6.51.081122.ebuild prekin-6.51.081122-r1.ebuild
@ 2010-10-10 21:28 Ulrich Mueller (ulm)
  0 siblings, 0 replies; 2+ messages in thread
From: Ulrich Mueller (ulm) @ 2010-10-10 21:28 UTC (permalink / raw
  To: gentoo-commits

ulm         10/10/10 21:28:36

  Modified:             ChangeLog prekin-6.51.081122.ebuild
                        prekin-6.51.081122-r1.ebuild
  Log:
  Fix openmotif dependency.
  
  (Portage version: 2.1.9.14/cvs/Linux x86_64)

Revision  Changes    Path
1.3                  sci-chemistry/prekin/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/ChangeLog?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/ChangeLog?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/ChangeLog?r1=1.2&r2=1.3

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- ChangeLog	3 Oct 2010 08:28:36 -0000	1.2
+++ ChangeLog	10 Oct 2010 21:28:36 -0000	1.3
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/prekin
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v 1.2 2010/10/03 08:28:36 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v 1.3 2010/10/10 21:28:36 ulm Exp $
+
+  10 Oct 2010; Ulrich Mueller <ulm@gentoo.org> prekin-6.51.081122.ebuild,
+  prekin-6.51.081122-r1.ebuild:
+  Fix openmotif dependency.
 
 *prekin-6.51.081122-r1 (03 Oct 2010)
 



1.3                  sci-chemistry/prekin/prekin-6.51.081122.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild?r1=1.2&r2=1.3

Index: prekin-6.51.081122.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- prekin-6.51.081122.ebuild	3 Oct 2010 08:28:36 -0000	1.2
+++ prekin-6.51.081122.ebuild	10 Oct 2010 21:28:36 -0000	1.3
@@ -1,6 +1,6 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild,v 1.2 2010/10/03 08:28:36 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild,v 1.3 2010/10/10 21:28:36 ulm Exp $
 
 EAPI="2"
 
@@ -20,7 +20,7 @@
 RDEPEND="
 	x11-libs/libX11
 	x11-libs/libXt
-	X? ( 	x11-libs/openmotif )"
+	X? ( >=x11-libs/openmotif-2.3:0 )"
 DEPEND="${RDEPEND}"
 
 S="${WORKDIR}/${MY_P}"



1.2                  sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild?r1=1.1&r2=1.2

Index: prekin-6.51.081122-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- prekin-6.51.081122-r1.ebuild	3 Oct 2010 08:28:36 -0000	1.1
+++ prekin-6.51.081122-r1.ebuild	10 Oct 2010 21:28:36 -0000	1.2
@@ -1,6 +1,6 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild,v 1.1 2010/10/03 08:28:36 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild,v 1.2 2010/10/10 21:28:36 ulm Exp $
 
 EAPI="2"
 
@@ -20,7 +20,7 @@
 RDEPEND="
 	x11-libs/libX11
 	x11-libs/libXt
-	X? ( 	x11-libs/openmotif )"
+	X? ( >=x11-libs/openmotif-2.3:0 )"
 DEPEND="${RDEPEND}"
 
 S="${WORKDIR}/${MY_P}"






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2010-10-03  8:28 [gentoo-commits] gentoo-x86 commit in sci-chemistry/prekin: ChangeLog prekin-6.51.081122.ebuild prekin-6.51.081122-r1.ebuild Justin Lecher (jlec)
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