* [gentoo-commits] gentoo-x86 commit in sci-biology/wise: wise-2.2.0.ebuild ChangeLog wise-2.4.0_alpha.ebuild
@ 2010-06-23 13:10 Justin Lecher (jlec)
0 siblings, 0 replies; 2+ messages in thread
From: Justin Lecher (jlec) @ 2010-06-23 13:10 UTC (permalink / raw
To: gentoo-commits
jlec 10/06/23 13:10:09
Modified: wise-2.2.0.ebuild ChangeLog
Added: wise-2.4.0_alpha.ebuild
Log:
Version bump, #191982
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.11 sci-biology/wise/wise-2.2.0.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild?rev=1.11&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild?rev=1.11&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild?r1=1.10&r2=1.11
Index: wise-2.2.0.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -r1.10 -r1.11
--- wise-2.2.0.ebuild 5 Aug 2009 19:42:00 -0000 1.10
+++ wise-2.2.0.ebuild 23 Jun 2010 13:10:09 -0000 1.11
@@ -1,26 +1,25 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.10 2009/08/05 19:42:00 ssuominen Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.11 2010/06/23 13:10:09 jlec Exp $
inherit eutils toolchain-funcs
DESCRIPTION="Intelligent algorithms for DNA searches"
-LICENSE="BSD"
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}2/${PN}${PV}.tar.gz"
+LICENSE="BSD"
SLOT="0"
IUSE=""
KEYWORDS="~alpha ia64 ~sparc x86 ~amd64"
RDEPEND="=sci-biology/hmmer-2.3.2-r1"
-
DEPEND="${RDEPEND}
app-shells/tcsh
dev-lang/perl
virtual/latex-base"
-S=${WORKDIR}/${PN}${PV}
+S="${WORKDIR}"/${PN}${PV}
src_unpack() {
unpack ${A}
1.15 sci-biology/wise/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?rev=1.15&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?rev=1.15&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?r1=1.14&r2=1.15
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -r1.14 -r1.15
--- ChangeLog 5 Aug 2009 19:42:00 -0000 1.14
+++ ChangeLog 23 Jun 2010 13:10:09 -0000 1.15
@@ -1,6 +1,13 @@
# ChangeLog for sci-biology/wise
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.14 2009/08/05 19:42:00 ssuominen Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.15 2010/06/23 13:10:09 jlec Exp $
+
+*wise-2.4.0_alpha (23 Jun 2010)
+
+ 23 Jun 2010; Justin Lecher <jlec@gentoo.org> wise-2.2.0.ebuild,
+ +wise-2.4.0_alpha.ebuild, +files/wise-2.4.0_alpha-cflags.patch,
+ +files/wise-2.4.0_alpha-glibc-2.10.patch:
+ Version bump, #191982
05 Aug 2009; Samuli Suominen <ssuominen@gentoo.org> wise-2.2.0.ebuild,
+files/wise-2.2.0-glibc-2.10.patch:
1.1 sci-biology/wise/wise-2.4.0_alpha.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild?rev=1.1&content-type=text/plain
Index: wise-2.4.0_alpha.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v 1.1 2010/06/23 13:10:09 jlec Exp $
EAPI="3"
inherit eutils toolchain-funcs versionator
DESCRIPTION="Intelligent algorithms for DNA searches"
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${PN}$(delete_version_separator 3).tar.gz"
LICENSE="BSD"
SLOT="0"
IUSE="doc"
KEYWORDS="~alpha ~amd64 ~ia64 ~sparc ~x86"
RDEPEND="=sci-biology/hmmer-2.3.2-r1"
DEPEND="
${RDEPEND}
app-shells/tcsh
dev-lang/perl
virtual/latex-base"
S="${WORKDIR}"/${PN}$(delete_version_separator 3)
src_prepare() {
epatch "${FILESDIR}"/${P}-glibc-2.10.patch
epatch "${FILESDIR}"/${P}-cflags.patch
cd "${S}"/docs
cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex
cat wise2api.tex temp.tex apiend.tex > api.tex
epatch "${FILESDIR}"/${PN}-api.tex.patch
}
src_compile() {
emake \
-C src \
CC="$(tc-getCC)" \
all || die
if use doc; then
cd "${S}"/docs
for i in api appendix dynamite wise2 wise3arch; do
latex ${i} || die
latex ${i} || die
dvips ${i}.dvi -o || die
done
fi
}
src_test() {
cd "${S}"/src
WISECONFIGDIR="${S}/wisecfg" make test || die
}
src_install() {
dobin "${S}"/src/bin/* || die "Failed to install program"
dolib.a "${S}"/src/base/libwisebase.a || die "Failed to install libwisebase"
dolib.a "${S}"/src/dynlibsrc/libdyna.a || die "Failed to install libdyna"
dobin "${S}"/src/dynlibsrc/testgendb || die "Failed to install testgendb"
dolib.a "${S}"/src/models/libmodel.a || die "Failed to install libmodel"
insinto /usr/share/${PN}
doins -r "${S}"/wisecfg || die "Failed to install wisecfg"
if use doc; then
insinto /usr/share/doc/${PF}
doins "${S}"/docs/*.ps || die "Failed to install documentation"
fi
newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file"
}
^ permalink raw reply [flat|nested] 2+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/wise: wise-2.2.0.ebuild ChangeLog wise-2.4.0_alpha.ebuild
@ 2010-10-02 15:08 Andreas HAttel (dilfridge)
0 siblings, 0 replies; 2+ messages in thread
From: Andreas HAttel (dilfridge) @ 2010-10-02 15:08 UTC (permalink / raw
To: gentoo-commits
dilfridge 10/10/02 15:08:42
Modified: wise-2.2.0.ebuild ChangeLog wise-2.4.0_alpha.ebuild
Log:
Less strict RDEPEND: ~sci-biology/hmmer-2.3.2 instead of =sci-biology/hmmer-2.3.2-r1. Bug 265534.
(Portage version: 2.1.9.13/cvs/Linux x86_64)
Revision Changes Path
1.12 sci-biology/wise/wise-2.2.0.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild?rev=1.12&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild?rev=1.12&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild?r1=1.11&r2=1.12
Index: wise-2.2.0.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -r1.11 -r1.12
--- wise-2.2.0.ebuild 23 Jun 2010 13:10:09 -0000 1.11
+++ wise-2.2.0.ebuild 2 Oct 2010 15:08:42 -0000 1.12
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.11 2010/06/23 13:10:09 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.12 2010/10/02 15:08:42 dilfridge Exp $
inherit eutils toolchain-funcs
@@ -13,7 +13,7 @@
IUSE=""
KEYWORDS="~alpha ia64 ~sparc x86 ~amd64"
-RDEPEND="=sci-biology/hmmer-2.3.2-r1"
+RDEPEND="~sci-biology/hmmer-2.3.2"
DEPEND="${RDEPEND}
app-shells/tcsh
dev-lang/perl
1.16 sci-biology/wise/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?rev=1.16&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?rev=1.16&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/ChangeLog?r1=1.15&r2=1.16
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -r1.15 -r1.16
--- ChangeLog 23 Jun 2010 13:10:09 -0000 1.15
+++ ChangeLog 2 Oct 2010 15:08:42 -0000 1.16
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/wise
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.15 2010/06/23 13:10:09 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.16 2010/10/02 15:08:42 dilfridge Exp $
+
+ 02 Oct 2010; Andreas K. Huettel <dilfridge@gentoo.org> wise-2.2.0.ebuild,
+ wise-2.4.0_alpha.ebuild:
+ Less strict RDEPEND: ~sci-biology/hmmer-2.3.2 instead of
+ =sci-biology/hmmer-2.3.2-r1. Fixes bug 265534.
*wise-2.4.0_alpha (23 Jun 2010)
1.2 sci-biology/wise/wise-2.4.0_alpha.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild?r1=1.1&r2=1.2
Index: wise-2.4.0_alpha.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- wise-2.4.0_alpha.ebuild 23 Jun 2010 13:10:09 -0000 1.1
+++ wise-2.4.0_alpha.ebuild 2 Oct 2010 15:08:42 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v 1.1 2010/06/23 13:10:09 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v 1.2 2010/10/02 15:08:42 dilfridge Exp $
EAPI="3"
@@ -15,7 +15,7 @@
IUSE="doc"
KEYWORDS="~alpha ~amd64 ~ia64 ~sparc ~x86"
-RDEPEND="=sci-biology/hmmer-2.3.2-r1"
+RDEPEND="~sci-biology/hmmer-2.3.2"
DEPEND="
${RDEPEND}
app-shells/tcsh
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2010-10-02 15:08 [gentoo-commits] gentoo-x86 commit in sci-biology/wise: wise-2.2.0.ebuild ChangeLog wise-2.4.0_alpha.ebuild Andreas HAttel (dilfridge)
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